BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949018
Length=413
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33720.1 | Symbols: | AP2/B3-like transcriptional factor fa... 305 2e-82
> AT2G33720.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr2:14263732-14265202 FORWARD LENGTH=1238
Length=1238
Score = 305 bits (165), Expect = 2e-82
Identities = 230/261 (88%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 23 GTCGTCGGAAAACCCTAACAAGATTTTGGTCTCCACGACTCTATGTTTGTCGTCATGTAA 82
||| ||||||||| |||| |||| |||||||||||| ||||| | ||||||||| ||| |
Sbjct 101 GTCATCGGAAAACTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGA 160
Query 83 AAACCC---TAAGAGGAAGATGAACTCTGATGATGATCCT-AAGGTTTCTTGCAGACCAA 138
|||||| ||||||||||||||||||||| || | | || || ||||||||| |||||
Sbjct 161 AAACCCTAATAAGAGGAAGATGAACTCTGACGAAG-TTCTCAATATTTCTTGCATACCAA 219
Query 139 GCGACTACAAATTAACAAAAGAAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGAATG 198
| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 220 GAGACTACAAATTAACACAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATC 279
Query 199 AAGAAAAGGCAGAGGACGAATGGTACGGTATCTCAACAGAACTAACACTTTTCAAAAGAT 258
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 280 AAGAAAAGGCAGAGGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAG-GAT 338
Query 259 CCTTGGATCATCAAGAAGGTT 279
|| ||||||||||| ||||||
Sbjct 339 CCGTGGATCATCAAAAAGGTT 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19554154361
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5