BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949022
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42470.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Brain/rep... 1676 0.0
> AT5G42470.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Brain/reproductive
organ-expressed protein (InterPro:IPR010358); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr5:16982305-16984884 FORWARD LENGTH=1355
Length=1355
Score = 1676 bits (907), Expect = 0.0
Identities = 1094/1184 (92%), Gaps = 13/1184 (1%)
Strand=Plus/Plus
Query 14 GATCC-TCCTATGGCGTTCGAAGGACTCCCACCTCTAATCGCTC-ACCAGCTCCACTACT 71
||||| ||| ||||||||||||| | |||||||||||||||| | |||||||||||||||
Sbjct 51 GATCCTTCCCATGGCGTTCGAAGAATTCCCACCTCTAATCGC-CGACCAGCTCCACTACT 109
Query 72 TACTCAACCACTCGCCTGATTCCATCAAGATCGAAAATGTCTGGTCTGGTAACAAGATTA 131
||||||| ||||| ||||||||||||||||||| ||| || |||||||||||||| ||||
Sbjct 110 TACTCAATCACTCACCTGATTCCATCAAGATCGCAAACGTGTGGTCTGGTAACAAAATTA 169
Query 132 ATCCCAAGATTCTCGATCGCTTTACTTTGGTGATACCTTATTGTCTAGAGACTATCAAAT 191
|||||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||
Sbjct 170 ATCCCAAGATTCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAAT 229
Query 192 GGGATGTTATTTACAATTCAGAGTATCCAGTGGATCCTCCTGATTTCGTATTCGGACCAG 251
|||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||
Sbjct 230 GGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATTTGGACCAG 289
Query 252 ACGACGAAGATTTTATGCCGTGT-A--GT---GCTATTGCTCCTGATGATGATCAGATAT 305
|||||||||||||| |||||||| | || ||||||||||||||||||||||||||||
Sbjct 290 ACGACGAAGATTTTGTGCCGTGTAAGTGTAGCGCTATTGCTCCTGATGATGATCAGATAT 349
Query 306 CATCATTGAAGAAGGCTTTGTCCGAGTGGGATAACGAGGACTCGACGCGGTTACTTGTTA 365
||||| || ||||||||||||| ||||||||| |||||||||| || |||||||||||||
Sbjct 350 CATCACTGGAGAAGGCTTTGTCTGAGTGGGATCACGAGGACTCCACTCGGTTACTTGTTA 409
Query 366 TCATTCAAGGATTGAGGGATCAATATGTGGCATACCAAAGAAGGCGTGTGGGCCAAGTTG 425
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 410 TCATTCAAGGATTGAGGGATCAATATGTGGCCTACCAAAGAAGGCGTGTGGGTCAAGTTG 469
Query 426 ATGATGATCGCGTGAAGTTTGAGATTAGCACCGTTTTAACTCGCAAGGGAATTGAAATGC 485
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 470 ATGATGATCGAGTTAAGTTTGAGATTAGCACCGTCTTAACTCGCAAGGGAATTGAAATGC 529
Query 486 AAATGGCTTCAGGAGTTGACAAGCCAGAGGAAGTCAAGTTTGCAGTACCTCTTGTGATGG 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AAATGGCTTCAGGAGTTGACAAGCCAGAGGAAGTCAAGTTTGCAGTACCTCTTGTGATGG 589
Query 546 ATATGAACATAAACAAAATGGTAGCGGGGTGTCCTTGGAAGCATCAGCAGAAGATTTATC 605
|||||||||||||||||||||| | || || ||||||||||||||||||||||||||||
Sbjct 590 ATATGAACATAAACAAAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATC 649
Query 606 TTCAGGTAGTATACCCGATTCTTCGAAAATATGAATCTGCACCTTC-GACACCTCGTTTG 664
||||||||||||||||||||||||| ||||||||| | ||||| || | |||||||||||
Sbjct 650 TTCAGGTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTCAG-CACCTCGTTTG 708
Query 665 AGATTAGTATCATCTTCTGATTTAAAAGCTCTATTCTCTGTTGAGGATGTTAAACTTCCT 724
| ||||||||||| || |||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 709 AAATTAGTATCATATTATGATTTAAAATCGCTATTCTCTGTTGAGGATGTTAAACTTTCT 768
Query 725 CCATGGATGGACGGGATGTGCTTGGCTGAATATCTTCCTCATCTCGAAGAAACTCTTGAG 784
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 769 CCATGGATGGACGGGATGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAG 828
Query 785 AGACAAATTGAGGAAGCTGTTTCTGCAATTGATTTAAGGAGGAGTTTTATTGAGGCTTTG 844
||||| || | ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 829 AGACAGATCCATGAAGCTGTTGCTGCAATTGATTTAAGGAGGAGTTTTATTGAGGCATTA 888
Query 845 ACTCTTTTTCTTGGAAGACCTCTTGAAGCTGATCCTACCTTTTGCCGTAAGGCTACATTC 904
| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 889 AGTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCTACCTTTTGCCGTAAGGCTACATTC 948
Query 905 CTTACTGCCTCTGGACAATTTACTTTCACGGTTCATTTCTTCTTTTCAACTCAATTTCCG 964
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 949 CTTAATGCCTCTGGACAATTTACTTTCATGGTTCATTTCTTCTTTTCAACTCAATTTCCG 1008
Query 965 AAGCAGCAACCAACCCTAATGCTTCAGAGTTGTCAGCATTTAAACCAATCGAGCGTGCCG 1024
|||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||
Sbjct 1009 AAGCAGCAACCAACTCTGATGCTGCAAAGTTGTCAGCATTTAAACCAATCGAGTGTGCCA 1068
Query 1025 GTAAAATCAAACCTCTTCACTGAGTACCCATGGAGTCCAAGATGGGAAGTGGGGCGCATG 1084
|| ||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1069 GTGAAATCGAATCTCCTCACTGAGTACCCATGGAGTCCAAGATGGGAAGTGGGACGCATG 1128
Query 1085 GCTGAGAGACTGTGTGACTTCCTGACCGACGAGACTGTCAACTTCAAAAAATATTGTAAC 1144
|||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1129 GCTGAGCGACTGTGTGACTTCCTGACCGACGAGGCTGTCAACTTTAAAAAATATTGTAAC 1188
Query 1145 GAAGCTCTACTCCAACATTAGTGTATCTATATTT-AAAGTTAGT 1187
|||||||| ||||||||||||||||||||| || |||||||||
Sbjct 1189 GAAGCTCTGCTCCAACATTAGTGTATCTAT-TTCGAAAGTTAGT 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5