BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949022 Length=1190 Score E Sequences producing significant alignments: (Bits) Value AT5G42470.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Brain/rep... 1676 0.0 > AT5G42470.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16982305-16984884 FORWARD LENGTH=1355 Length=1355 Score = 1676 bits (907), Expect = 0.0 Identities = 1094/1184 (92%), Gaps = 13/1184 (1%) Strand=Plus/Plus Query 14 GATCC-TCCTATGGCGTTCGAAGGACTCCCACCTCTAATCGCTC-ACCAGCTCCACTACT 71 ||||| ||| ||||||||||||| | |||||||||||||||| | ||||||||||||||| Sbjct 51 GATCCTTCCCATGGCGTTCGAAGAATTCCCACCTCTAATCGC-CGACCAGCTCCACTACT 109 Query 72 TACTCAACCACTCGCCTGATTCCATCAAGATCGAAAATGTCTGGTCTGGTAACAAGATTA 131 ||||||| ||||| ||||||||||||||||||| ||| || |||||||||||||| |||| Sbjct 110 TACTCAATCACTCACCTGATTCCATCAAGATCGCAAACGTGTGGTCTGGTAACAAAATTA 169 Query 132 ATCCCAAGATTCTCGATCGCTTTACTTTGGTGATACCTTATTGTCTAGAGACTATCAAAT 191 |||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||| Sbjct 170 ATCCCAAGATTCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAAT 229 Query 192 GGGATGTTATTTACAATTCAGAGTATCCAGTGGATCCTCCTGATTTCGTATTCGGACCAG 251 |||||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||| Sbjct 230 GGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATTTGGACCAG 289 Query 252 ACGACGAAGATTTTATGCCGTGT-A--GT---GCTATTGCTCCTGATGATGATCAGATAT 305 |||||||||||||| |||||||| | || |||||||||||||||||||||||||||| Sbjct 290 ACGACGAAGATTTTGTGCCGTGTAAGTGTAGCGCTATTGCTCCTGATGATGATCAGATAT 349 Query 306 CATCATTGAAGAAGGCTTTGTCCGAGTGGGATAACGAGGACTCGACGCGGTTACTTGTTA 365 ||||| || ||||||||||||| ||||||||| |||||||||| || ||||||||||||| Sbjct 350 CATCACTGGAGAAGGCTTTGTCTGAGTGGGATCACGAGGACTCCACTCGGTTACTTGTTA 409 Query 366 TCATTCAAGGATTGAGGGATCAATATGTGGCATACCAAAGAAGGCGTGTGGGCCAAGTTG 425 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 410 TCATTCAAGGATTGAGGGATCAATATGTGGCCTACCAAAGAAGGCGTGTGGGTCAAGTTG 469 Query 426 ATGATGATCGCGTGAAGTTTGAGATTAGCACCGTTTTAACTCGCAAGGGAATTGAAATGC 485 |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 470 ATGATGATCGAGTTAAGTTTGAGATTAGCACCGTCTTAACTCGCAAGGGAATTGAAATGC 529 Query 486 AAATGGCTTCAGGAGTTGACAAGCCAGAGGAAGTCAAGTTTGCAGTACCTCTTGTGATGG 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 AAATGGCTTCAGGAGTTGACAAGCCAGAGGAAGTCAAGTTTGCAGTACCTCTTGTGATGG 589 Query 546 ATATGAACATAAACAAAATGGTAGCGGGGTGTCCTTGGAAGCATCAGCAGAAGATTTATC 605 |||||||||||||||||||||| | || || |||||||||||||||||||||||||||| Sbjct 590 ATATGAACATAAACAAAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATC 649 Query 606 TTCAGGTAGTATACCCGATTCTTCGAAAATATGAATCTGCACCTTC-GACACCTCGTTTG 664 ||||||||||||||||||||||||| ||||||||| | ||||| || | ||||||||||| Sbjct 650 TTCAGGTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTCAG-CACCTCGTTTG 708 Query 665 AGATTAGTATCATCTTCTGATTTAAAAGCTCTATTCTCTGTTGAGGATGTTAAACTTCCT 724 | ||||||||||| || |||||||||| | ||||||||||||||||||||||||||| || Sbjct 709 AAATTAGTATCATATTATGATTTAAAATCGCTATTCTCTGTTGAGGATGTTAAACTTTCT 768 Query 725 CCATGGATGGACGGGATGTGCTTGGCTGAATATCTTCCTCATCTCGAAGAAACTCTTGAG 784 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 769 CCATGGATGGACGGGATGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAG 828 Query 785 AGACAAATTGAGGAAGCTGTTTCTGCAATTGATTTAAGGAGGAGTTTTATTGAGGCTTTG 844 ||||| || | ||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 829 AGACAGATCCATGAAGCTGTTGCTGCAATTGATTTAAGGAGGAGTTTTATTGAGGCATTA 888 Query 845 ACTCTTTTTCTTGGAAGACCTCTTGAAGCTGATCCTACCTTTTGCCGTAAGGCTACATTC 904 | |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 889 AGTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCTACCTTTTGCCGTAAGGCTACATTC 948 Query 905 CTTACTGCCTCTGGACAATTTACTTTCACGGTTCATTTCTTCTTTTCAACTCAATTTCCG 964 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 949 CTTAATGCCTCTGGACAATTTACTTTCATGGTTCATTTCTTCTTTTCAACTCAATTTCCG 1008 Query 965 AAGCAGCAACCAACCCTAATGCTTCAGAGTTGTCAGCATTTAAACCAATCGAGCGTGCCG 1024 |||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||| Sbjct 1009 AAGCAGCAACCAACTCTGATGCTGCAAAGTTGTCAGCATTTAAACCAATCGAGTGTGCCA 1068 Query 1025 GTAAAATCAAACCTCTTCACTGAGTACCCATGGAGTCCAAGATGGGAAGTGGGGCGCATG 1084 || ||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1069 GTGAAATCGAATCTCCTCACTGAGTACCCATGGAGTCCAAGATGGGAAGTGGGACGCATG 1128 Query 1085 GCTGAGAGACTGTGTGACTTCCTGACCGACGAGACTGTCAACTTCAAAAAATATTGTAAC 1144 |||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 1129 GCTGAGCGACTGTGTGACTTCCTGACCGACGAGGCTGTCAACTTTAAAAAATATTGTAAC 1188 Query 1145 GAAGCTCTACTCCAACATTAGTGTATCTATATTT-AAAGTTAGT 1187 |||||||| ||||||||||||||||||||| || ||||||||| Sbjct 1189 GAAGCTCTGCTCCAACATTAGTGTATCTAT-TTCGAAAGTTAGT 1231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58433434380 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5