BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949030

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:75...   132    2e-30


> AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:7524342-7526160 
FORWARD LENGTH=1819
Length=1819

 Score =  132 bits (71),  Expect = 2e-30
 Identities = 111/130 (85%), Gaps = 4/130 (3%)
 Strand=Plus/Plus

Query  92   CGTATCAAGGAGTTCTC-GGCGTGTATTTTGAAGCTACCACCGGAAAAGCATATCCGAAA  150
            ||||||||||||||| | || | ||| |  |||||  || |||||||||| || || |||
Sbjct  689  CGTATCAAGGAGTTC-CGGGAGCGTACTCCGAAGCGGCCGCCGGAAAAGCTTA-CCCAAA  746

Query  151  -TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGTTTCAGGCGGTGGAGCTTTGGAT  209
             || |||| |||||  |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  747  CTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGAT  806

Query  210  CGCCGATCGT  219
            ||||||||||
Sbjct  807  CGCCGATCGT  816



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12164795258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5