BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949037 Length=501 Score E Sequences producing significant alignments: (Bits) Value AT2G05110.1 | Symbols: | transposable element gene | chr2:1828... 115 4e-25 AT3G32043.1 | Symbols: | transposable element gene | chr3:1305... 86.1 3e-16 > AT2G05110.1 | Symbols: | transposable element gene | chr2:1828028-1833219 REVERSE LENGTH=5192 Length=5192 Score = 115 bits (62), Expect = 4e-25 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 416 TCCGACTAACCCCAAC-CCCAAAGGTGATGGTACGGTGGGCCATAAGCCACCGGAGCCGC 474 ||| ||| |||||||| ||| |||||||||||||||||| |||||||||||||||||| Sbjct 1035 TCCAACT-ACCCCAACAAACAACGGTGATGGTACGGTGGGCAATAAGCCACCGGAGCCGC 1093 Query 475 AATGAATACAGCCTTTTGGAACTGCCG 501 |||||||||| |||||||||||||||| Sbjct 1094 AATGAATACATCCTTTTGGAACTGCCG 1120 > AT3G32043.1 | Symbols: | transposable element gene | chr3:13053130-13058318 REVERSE LENGTH=5189 Length=5189 Score = 86.1 bits (46), Expect = 3e-16 Identities = 71/82 (87%), Gaps = 5/82 (6%) Strand=Plus/Plus Query 423 AACCCCAACC-CCAA-AGGTGATGGTACGGTGGGCCATAAGCCACCGGAGCC-GCAATGA 479 ||| |||||| ||| | |||||||||||||||||||||||||||||||| | | | ||| Sbjct 1026 AACACCAACCAACAACA-GTGATGGTACGGTGGGCCATAAGCCACCGGAGTCAGGA-TGA 1083 Query 480 ATACAGCCTTTTGGAACTGCCG 501 ||||| ||||||||||| |||| Sbjct 1084 ATACAACCTTTTGGAACGGCCG 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23911453972 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5