BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949037

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05110.1 | Symbols:  | transposable element gene | chr2:1828...   115    4e-25
  AT3G32043.1 | Symbols:  | transposable element gene | chr3:1305...  86.1    3e-16


> AT2G05110.1 | Symbols:  | transposable element gene | chr2:1828028-1833219 
REVERSE LENGTH=5192
Length=5192

 Score =  115 bits (62),  Expect = 4e-25
 Identities = 79/87 (91%), Gaps = 2/87 (2%)
 Strand=Plus/Plus

Query  416   TCCGACTAACCCCAAC-CCCAAAGGTGATGGTACGGTGGGCCATAAGCCACCGGAGCCGC  474
             ||| ||| ||||||||   ||| |||||||||||||||||| ||||||||||||||||||
Sbjct  1035  TCCAACT-ACCCCAACAAACAACGGTGATGGTACGGTGGGCAATAAGCCACCGGAGCCGC  1093

Query  475   AATGAATACAGCCTTTTGGAACTGCCG  501
             |||||||||| ||||||||||||||||
Sbjct  1094  AATGAATACATCCTTTTGGAACTGCCG  1120


> AT3G32043.1 | Symbols:  | transposable element gene | chr3:13053130-13058318 
REVERSE LENGTH=5189
Length=5189

 Score = 86.1 bits (46),  Expect = 3e-16
 Identities = 71/82 (87%), Gaps = 5/82 (6%)
 Strand=Plus/Plus

Query  423   AACCCCAACC-CCAA-AGGTGATGGTACGGTGGGCCATAAGCCACCGGAGCC-GCAATGA  479
             ||| ||||||  ||| | |||||||||||||||||||||||||||||||| | | | |||
Sbjct  1026  AACACCAACCAACAACA-GTGATGGTACGGTGGGCCATAAGCCACCGGAGTCAGGA-TGA  1083

Query  480   ATACAGCCTTTTGGAACTGCCG  501
             ||||| ||||||||||| ||||
Sbjct  1084  ATACAACCTTTTGGAACGGCCG  1105



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5