BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949038

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12200.2 | Symbols: Nek7 | NIMA-related kinase 7 | chr3:3887...  69.4    2e-11


> AT3G12200.2 | Symbols: Nek7 | NIMA-related kinase 7 | chr3:3887108-3891000 
REVERSE LENGTH=2261
Length=2261

 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 45/49 (92%), Gaps = 0/49 (0%)
 Strand=Plus/Plus

Query  272  GAACAGGGCTAATGCTATTAAGAAAGCGAGAGGAAAGTTATTTCCAGAG  320
            ||||| |||||||||||||||||||||||||||||| ||||| || |||
Sbjct  786  GAACATGGCTAATGCTATTAAGAAAGCGAGAGGAAAATTATTCCCGGAG  834



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5