BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949040
Length=430
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12290.1 | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974171-... 416 8e-116
> AT5G12290.1 | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974171-3978160
REVERSE LENGTH=2106
Length=2106
Score = 416 bits (225), Expect = 8e-116
Identities = 257/273 (94%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 28 AGGATAGCAGAGCTCAAGGACGAGGAAGGATTGCTCGTATTCACAGGAGACTACTTGTCA 87
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1569 AGGATAGCAAAGCTCAAGGACGAGGAAGAATTGCTCGTATTCACAGGAGACTACTTGTCG 1628
Query 88 TTGAAACTGAAAAGAGAATTATGCAATATCAGAGCTATATTGAAGAAGGACGTGATAAGG 147
|||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 1629 TTGAAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGG 1688
Query 148 ATGCAGAAACCGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTATCGGGTTGTCG 207
| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1689 ACGCAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGAGTTGTTG 1748
Query 208 AGAAACCTGCAAGAGCAACCGACGACTGGGATTTAGTGAAACAAGATCTTATTGAGTTAG 267
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1749 AGAAACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATCGAGTTAG 1808
Query 268 GAAGGCCACAGCATCAAACATCATACAAGCTAA 300
||||||||||||| |||||||||||||||||||
Sbjct 1809 GAAGGCCACAGCAGCAAACATCATACAAGCTAA 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20408706094
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5