BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949042
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1... 625 3e-178
> AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP
1 | chr3:9188181-9191419 FORWARD LENGTH=2009
Length=2009
Score = 625 bits (338), Expect = 3e-178
Identities = 389/414 (94%), Gaps = 2/414 (0%)
Strand=Plus/Plus
Query 384 AGAACCAGAGTATGCCTTTGGTTCTACTGTGTCACGACAGGAATTGGCTGTGGTGCCGCC 443
||| || ||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1123 AGACCCTGAGTATGCCTTTGGTTCTAATGAGTCACAACAGGAATTGGCTGTGGTGCCGCC 1182
Query 444 AAACTCAACCGTTAATTATGAGGTTGACCT-TGTGACTTTCGAAAAGGAAAGAGAATTGT 502
||||||||| |||| ||||||||||||||| | |||||||||| |||||||| |||| ||
Sbjct 1183 AAACTCAACTGTTACTTATGAGGTTGACCTAT-TGACTTTCGACAAGGAAAGGGAATCGT 1241
Query 503 GGGACATGAACACTGAGGAGAAGATAGAAGCTGCTGGTAAGAAGAAGGAAGAAGGAAATG 562
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1242 GGGACATGAACACTGAGGAGAAGATTGAAGCTGCTAGTAAGAAGAAGGAAGAAGGAAATT 1301
Query 563 CCAAGTTTAAAGCAGGCAAATATGCCCTGGCTTCCAAGAGATATGAGAAGGCTGTCAAAT 622
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1302 CCAAGTTTAAAGGAGGCAAATATTCCCTGGCTTCCAAGAGATATGAGAAGGCTGTCAAAT 1361
Query 623 TCATTGAATATGACACATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGG 682
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGG 1421
Query 683 TGGCGTGCAATCTAAAGGATGTAGCCTGCAAACTGAAGTTGAAAGATTACAAGCAGGCTG 742
|||| ||||||||||| |||| |||||||||||| || |||||||||||||||||||| |
Sbjct 1422 TGGCATGCAATCTAAACGATGCAGCCTGCAAACTCAAATTGAAAGATTACAAGCAGGCCG 1481
Query 743 AAAAACTATGCACAAAGGTCTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTAT 796
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1482 AAAAACTATGCACAAAGGTGTTAGAGCTAGAAAGCACCAATGTGAAGGCCTTAT 1535
Score = 285 bits (154), Expect = 6e-76
Identities = 217/247 (88%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 143 CGGTTCCTCC-AAGTGCAACGCTTGTGATCAATCTGGAGTTAGTTTCTTGGAAAACAGTT 201
|||||||||| || ||| ||||| | ||||||| ||||||||||||| |||||||||||
Sbjct 810 CGGTTCCTCCTAA-TGCGACGCTCGAGATCAATTTGGAGTTAGTTTCGTGGAAAACAGTG 868
Query 202 TCAGAAGTAACTGATGATAACAAGGTTATGaaaaaaaTTTTGAAGGAAGGGAAAGGATAT 261
||||||||||||||||||||||||||| |||| ||| | |||||||||||| | ||||||
Sbjct 869 TCAGAAGTAACTGATGATAACAAGGTTGTGAAGAAAGTCTTGAAGGAAGGGGATGGATAT 928
Query 262 GAGCGTCCTAACAAGGGTTCAGTTGTGAAAGTGAAATTGATAGG-AACACTTCAAAATGG 320
|||||||||||| |||| ||||||||||||||||||||||||| || ||||||| ||||
Sbjct 929 GAGCGTCCTAACGAGGGGGCAGTTGTGAAAGTGAAATTGATAGGGAA-ACTTCAAGATGG 987
Query 321 TACTGTATTCCTGAAGATAGGTCATGGAGA-AAGCGAGGGACCCTTTAAGTTCAAAACAG 379
||||||||| |||||| ||||||||| || || |||| ||| ||| ||||||||||||
Sbjct 988 TACTGTATTTTTGAAGAAAGGTCATGGTGAGAAT-GAGGAACCGTTTGAGTTCAAAACAG 1046
Query 380 ATGAAGA 386
|||||||
Sbjct 1047 ATGAAGA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5