BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949043
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42440.1 | Symbols: | Protein kinase superfamily protein | ... 1587 0.0
> AT5G42440.1 | Symbols: | Protein kinase superfamily protein
| chr5:16973304-16974574 REVERSE LENGTH=1271
Length=1271
Score = 1587 bits (859), Expect = 0.0
Identities = 1039/1126 (92%), Gaps = 11/1126 (1%)
Strand=Plus/Plus
Query 1 TACTAATCCCAAAACAGTATCCATGGATTACCAAACCTCACTAATCCTAGCCACCAGCAC 60
|||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 41 TACTGATCCC-AAACACTATCCATGGATTACCAAATCTCACTAATCCTAGCCACCAGCAT 99
Query 61 AAGCTCCATCTTCCTCTTGCTAATCTTCTTCACCGTCGTTATGTTGGTATGTCGCCGTCG 120
||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||
Sbjct 100 AAGCTCCATCTTCCTCTTGCTTATCGTCTTCACCGTCGTTATGATCGTATGTCGCCGTCG 159
Query 121 TCCTCCAATCGAAAACCATCCTCGCCGGAATCTTAACTT------CCCCGATCCCGATCT 174
|||||||||| ||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 160 TCCTCCAATCCAAAACCATCCTCGCCGGAATCGTAACTTCCCCGACCCCGATCCCGATCT 219
Query 175 AAACACGGAAACCGTAACCGAAAGCTTTGATCCATCAATCTGTGAAATATCCATGGCGGA 234
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 220 AAACACGGAAACAGTAACCGAAAGCTTCGATCCATCAATCTGTGAAATATCCATGGCGGA 279
Query 235 ACTCACTATAGCAACCAAAAACTTCTCATCTGATCTAATCGTCGGCGACGGAAGTTTCGG 294
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 280 ACTCACTATAGCAACTAAAAACTTCTCATCGGATCTTATCGTCGGCGACGGAAGTTTCGG 339
Query 295 TCTCGTTTATAAAGCTCAGCTCTCAAACGGCGTCGTAGTCGCCGTTAAAAAGCTCGATCA 354
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TCTCGTTTATCGAGCTCAGCTCTCAAACGGCGTCGTAGTCGCCGTTAAAAAGCTCGATCA 399
Query 355 CGACGCTTTACAAGGATTCCGTGAATTCGCAGCTGAAATGGACACTCTAGGTCGTCTCAA 414
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 400 CGACGCTTTACAAGGATTCCGAGAATTCGCAGCCGAAATGGACACTCTAGGTCGTCTCAA 459
Query 415 ACACCCAAACATAGTTCGGATTCTCGGTTATTGTATCTCCGGATTGGATCGGATTCTGAT 474
||||||||||||||| |||| ||||||||||| ||||| |||| ||||||||||| ||
Sbjct 460 TCACCCAAACATAGTTAGGATCCTCGGTTATTGCATCTCGGGATCAGATCGGATTCTTAT 519
Query 475 TTACGAGTTCTTAGAGAAAAGTAGCCTCGATTATTGGTTACACGAGACTGATGATGAGAA 534
||||||||||||||||||||||| || || |||||||||||||||||||| || |||||
Sbjct 520 CTACGAGTTCTTAGAGAAAAGTAGTCTTGACTATTGGTTACACGAGACTGACGAAGAGAA 579
Query 535 CAGTCCATTGACTTGGCCAACGCGCGTGAATATCACGCGCGATGTGGCCAAGGGTTTAGC 594
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CAGTCCATTGACTTGGTCAACGCGCGTGAATATCACGCGCGATGTGGCCAAGGGTTTAGC 639
Query 595 TTATCTTCATGGACTACCGAAGCCGATTATTCATAGAGATATTAAATCGAGTAATGTGTT 654
|||||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||||| |
Sbjct 640 TTATCTGCATGGTTTACCGAAACCAATTATACATAGAGATATCAAATCGAGTAATGTGCT 699
Query 655 GTTGGATTCGGATTTTGTTGCACATATAGCGGATTTCGGGTTGGCGCGTAGAATGGATGA 714
||||||||||||||| || || ||||| ||||||||||| |||||||| || || ||||
Sbjct 700 GTTGGATTCGGATTTCGTGGCGCATATTGCGGATTTCGGATTGGCGCGAAGGATCGATGC 759
Query 715 GTCGAGGACTCATGTGTCGACGCAAATGGCAGGGACGATGGGGTACATGCCCCCGGAGTA 774
||||||| | ||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 760 GTCGAGGTCGCATGTGTCGACGCAAGTGGCGGGGACGATGGGGTACATGCCACCGGAGTA 819
Query 775 TTGGGAAGGGAATACCGCGGCGACGGTTAAAGCTGATGTTTATAGTTTTGGTGTTTTGAT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 820 TTGGGAAGGGAATACCGCGGCGACGGTTAAAGCTGATGTTTATAGTTTTGGTGTATTGAT 879
Query 835 GTTGGAATTGGCGACGCGGAAACGGCCGAATTTAACGGTTTTTGTGGATGAGACGGAGGT 894
|||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||
Sbjct 880 GTTGGAATTGGCGACGCGGAGACGGCCGAATTTAACGGTTGTTGTGGATGAGAAGGAAGT 939
Query 895 TGGGTTGGCTCAATGGGCTGTGATCATGATGGAGCAAAATCGGTATTATGAAATGTTAGA 954
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 940 TGGGTTGGCTCAATGGGCTGTGATCATGGTGGAGCAAAATCGGTGTTATGAAATGTTGGA 999
Query 955 TTTCGGAGGTGTTGGTGGTAGTGAGAAAGGTGTGGAAGAGTATTTTAGGATTGCTTGTCT 1014
||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1000 TTTTGGAGGTGTTTGTGGTAGTGAGAAGGGAGTGGAAGAGTATTTTAGGATTGCTTGTCT 1059
Query 1015 TTGTATTAAAGAGTCGACTAGAGAAAGGCCTACTATGAATCAAGTGGTGGAGTTGTTGGA 1074
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1060 TTGTATTAAAGAGTCGACTAGAGAAAGGCCTACTATGGTTCAAGTGGTGGAGTTATTGGA 1119
Query 1075 AGAATTATGTCGACTTATGTAGTC-T-T-ACTCCA-TAGGTAGATG 1116
|| ||||||||| |||||||||| | | | |||| |||||| |||
Sbjct 1120 GGAGTTATGTCGATTTATGTAGTCATATTAATCCAATAGGTAAATG 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5