BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949044
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42420.1 | Symbols: | Nucleotide-sugar transporter family p... 1716 0.0
> AT5G42420.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr5:16968658-16970432 FORWARD LENGTH=1421
Length=1421
Score = 1716 bits (929), Expect = 0.0
Identities = 1041/1096 (95%), Gaps = 4/1096 (0%)
Strand=Plus/Plus
Query 2 TGGTGAAAGTTGACCAGAGATGGCGGCGGAGAATGAGAGAAAATCTCCTTCTGCAGTCTC 61
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 143 TGGTGACAGTTGACCAGAGATGGCGGCGGAGAATGAGAGAAAATCTCCTTCAGCAGTCTC 202
Query 62 CGATATGGGAGCTTGGGCAATGAATGTGATAAGCTCCGTCGGAATCATCATGGCGAATAA 121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 203 CGATATGGGAGCTTGGGCAATGAATGTGATAAGCTCCGTTGGAATCATCATGGCGAATAA 262
Query 122 ACAACTAATGTCTTCTTCTGGATTCGCATTTAGTTTCGCTACAACTCTCACCGGATTCCA 181
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 263 ACAACTTATGTCCTCTTCTGGATTCGCATTTAGTTTCGCTACAACTCTCACCGGTTTCCA 322
Query 182 CTTCGCTTTAACCGCATTGGTCGGTATGGTATCGAACGCTACCGGATTCTCTGCATCGAA 241
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 323 CTTCGCTTTAACCGCATTGGTCGGTATGGTATCAAACGCTACCGGATTCTCTGCTTCGAA 382
Query 242 GCATGTTCCTATGTGGGAGCTTATTTGGTTCTCCATTGTTGCTAATGTCTCTATCGCTGC 301
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 383 GCATGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGC 442
Query 302 TATGAATTTCAGTCTCATGCTCAATTCCGTTGGATTTTACCAAATCTCGAAGCTGAGCAT 361
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 443 TATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAATCTCGAAGCTGAGCAT 502
Query 362 GATTCCTGTGGTGTGTGTCATGGAATGGATTCTACACAGCAAGAGATACTCAAGAGAAGT 421
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 503 GATTCCTGTGGTATGTGTAATGGAATGGATTCTACATAGCAAGAGATACTCAAGAGAAGT 562
Query 422 GAAAATATCtgttgtggttgttgttgttggtgttgGTATTTGTACTGTGACTGATGTTAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GAAAATATCTGTTGTGGTTGTTGTTGTTGGTGTTGGTATTTGTACTGTGACTGATGTTAA 622
Query 482 GGTTAATGCCAAGGGATTTATTTGCGCTTGTGTTGCGATTTTCTCGTCATCGTTGCAGCA 541
||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 623 AGTTAATGCCAAAGGTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCA 682
Query 542 AATTTTAATTGGTTCTCTGCAGAAGAAATATTCAATTGGGTCTTTTGAGTTGTTGAGTAA 601
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 683 AATTTTAATAGGTTCTCTACAGAAGAAATATTCAATTGGGTCCTTTGAGTTGTTGAGTAA 742
Query 602 AACAGCGCCGATTCAAGCTCTTTCGCTTCTTGTTGTCGGTCCTTTAGTTGATTATCTTCT 661
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AACAGCGCCGATTCAAGCTTTTTCGCTTCTTGTTGTCGGTCCTTTAGTTGATTATCTTCT 802
Query 662 TAGTGGGAAGTTCATTATGAACTACAATATGTCTTCCGGTTGCTTTCTATTCATCCTTCT 721
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 803 TAGTGGGAAGTTCATTATGAAGTATAATATGTCTTCCGGTTGCTTTCTATTCATTCTTCT 862
Query 722 CTCGTGTGCTCTAGCTGTGTTCTGCAACATAAGCCAGTACCTTTGCATCGGGCGGTTTTC 781
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 CTCATGTGGTCTAGCTGTGTTCTGCAACATAAGCCAGTACCTTTGCATCGGGCGGTTTTC 922
Query 782 AGCAGTGTCGTTCCAGGTTATAGGTCACATGAAAACGGTGTGCATCCTCACGCTTGGATG 841
|||||| |||||||| ||||| |||||||||||||| || || |||||||||||||||||
Sbjct 923 AGCAGTATCGTTCCAAGTTATTGGTCACATGAAAACCGTCTGTATCCTCACGCTTGGATG 982
Query 842 GCTCCTTTTTGATTCTGCAATGACTTTCAAAAACGTAGCGGGCATGATTGTTGCGATTGT 901
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 983 GCTCCTATTTGATTCTGCAATGACTTTCAAAAACGTAGCGGGGATGATTGTTGCGATTGT 1042
Query 902 TGGGATGGTAATCTATAGCTGGGCAATGGAATTGGAGAAACAGTCTATTATTGCAGCAAA 961
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1043 TGGGATGGTAATCTATAGTTGGGCAATGGAATTGGAGAAACAGTCGATTATTGCAGCAAA 1102
Query 962 GGCTTTGAACAGTGTGAAACACAGTTTAACAGAAGAAGAATTTGAACTATTGAAGGAAGG 1021
|||||| |||||||||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct 1103 GGCTTTAAACAGTGTGAAACATAGCTTAACAGAGGAAGAGTTTGAACTTTTGAAGGAAGG 1162
Query 1022 TGTAGAAACTACGCAATCGAAAGATGTTGAACTTGGCCGCACAAAAGCTTAG-G-CAGAT 1079
|||||||||||| ||||| |||||||||||||||||||||||||||| |||| | |||||
Sbjct 1163 TGTAGAAACTACACAATCAAAAGATGTTGAACTTGGCCGCACAAAAGATTAGAGACAGAT 1222
Query 1080 GGATAGA-AA-GAAAC 1093
||||||| || |||||
Sbjct 1223 GGATAGAGAAAGAAAC 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5