BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949048

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53000.1 | Symbols: KDSB | Nucleotide-diphospho-sugar transf...   215    2e-55


> AT1G53000.1 | Symbols: KDSB | Nucleotide-diphospho-sugar transferases 
superfamily protein | chr1:19745046-19747245 REVERSE 
LENGTH=1269
Length=1269

 Score =  215 bits (116),  Expect = 2e-55
 Identities = 146/160 (91%), Gaps = 3/160 (2%)
 Strand=Plus/Plus

Query  7    TCTTCTCA-AAAGACATGGATTGTTCACGGGATCTTAGCCGGAACAACGATTGCAGCCGC  65
            |||||||| ||| |||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct  137  TCTTCTCAGAAA-ACATGGATTGTTAACGGGATCTTGGCCGGAACAGCGATTGCAGCCGC  195

Query  66   GATTGGCGCAAGTGCGTATCTAGGTTGATCCAAGAAATTCCGGAGCCGGGTCATCGGAAT  125
             || |||||| |||| ||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct  196  AATCGGCGCACGTGCTTATCTGGGTCGATCCAAGAAATTCCGGAGCCGGGTCGTCGGAAT  255

Query  126  CATTCGCGCACGTTACGCTTCCTCTCGATTCGAGGGCTAA  165
            ||||| |||||||||||||||||||||||||||||| |||
Sbjct  256  CATTCCCGCACGTTACGCTTCCTCTCGATTCGAGGG-TAA  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5