BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949051
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42380.1 | Symbols: CML39, CML37 | calmodulin like 37 | chr5... 893 0.0
> AT5G42380.1 | Symbols: CML39, CML37 | calmodulin like 37 | chr5:16942576-16943366
REVERSE LENGTH=791
Length=791
Score = 893 bits (483), Expect = 0.0
Identities = 561/598 (94%), Gaps = 8/598 (1%)
Strand=Plus/Plus
Query 2 ATATTCAAATCAAGAAATTATGACTCTCGCTAAGAACCAAAAATCACCATTGTCACGACT 61
|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 36 ATATTCAAATCAAG-AA--ATGACTCTCGCTAAGAACCAAAAATCATCATTGTCACGACT 92
Query 62 ATACAAGAAGGTTTCCAAGAAGAGATCAGAATCGTCAAGAAATCTTGAAGACGAAGCAAG 121
||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||
Sbjct 93 ATACAAGAAAGTTTCCTCGAAGAGATCAGAATCGTCAAGAAACCTTGAAGACGAATCAAG 152
Query 122 AACGAGCAGCAGCAGTAGCGGAAGCAGCTCGTTAAACATCGACGAGCTAAGAACTGTTTT 181
||||||||| | |||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 153 AACGAGCAGTAATAGTAGCGGAAGCAGCTCGTTAAACGTTAACGAGCTAAGAACCGTTTT 212
Query 182 TGACTACATGGATGCAAACTCCGATGGGAAAATCTCCGGTGAAGAGCTACAAAGCTGCGT 241
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 213 TGACTATATGGATGCAAACTCAGACGGGAAAATCTCCGGTGAAGAGCTACAAAGCTGCGT 272
Query 242 TAGTCTCTTAGGCGGCGCGTTATCGTCACGTGAGGCGGAGG-AGATAGTGAAGATATCAG 300
||||||||||||||||||||||||||||||||||| ||||| || | ||||||| |||||
Sbjct 273 TAGTCTCTTAGGCGGCGCGTTATCGTCACGTGAGGTGGAGGAAG-TGGTGAAGACATCAG 331
Query 301 ACGTTGACGGAGACGGGTTTATAGATTTTG-GTGAGTTTTTGAAGCTTATGGAAGGAGAA 359
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 332 ACGTTGACGGAGACGGGTTTATAGATTTTGAG-GAGTTTTTGAAGCTTATGGAAGGGGAA 390
Query 360 GATGGTAATGATGAAGAGAGGAGGAAGGAGCTGAGAGTGGCGTTTGGGATGTATGTGATG 419
||||||| ||||||||| |||||||||||| ||| || ||||||||||||||||| |||
Sbjct 391 GATGGTAGTGATGAAGAAAGGAGGAAGGAGTTGAAAGAAGCGTTTGGGATGTATGTTATG 450
Query 420 GAGGGGGAAGAGTTTATTACGGCGGCGAGTTTACGGAGGACGTTGAGTCGACTCGGCGAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GAGGGGGAAGAGTTTATTACGGCGGCGAGTTTACGGAGGACGTTGAGTCGACTCGGCGAG 510
Query 480 TCGTGTACGGTTGATGCTTGTAAGGTTATGATTCGTGGGTTTGATCAGAATGACGATGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCGTGTACGGTTGATGCTTGTAAGGTTATGATTCGTGGGTTTGATCAGAATGACGATGGA 570
Query 540 GTTCTCAGCTTTGAAGAATTTGTTTTGATGATGCGTTGAGATGATGATATATGGGATT 597
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 571 GTTCTCAGCTTTGACGAGTTTGTTTTGATGATGCGTTGAGATGAT-ATATATGGGATT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5