BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949064
Length=2036
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 | chr5:16927910-1... 3035 0.0
> AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 | chr5:16927910-16930472
REVERSE LENGTH=2264
Length=2264
Score = 3035 bits (1643), Expect = 0.0
Identities = 1910/2041 (94%), Gaps = 9/2041 (0%)
Strand=Plus/Plus
Query 1 TTCAAACGCGATAGAGAGTCTCTAATGGTC-ATTGTGATGGACGCAGATGAAGAATCCAC 59
|||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||
Sbjct 82 TTCAAACGCGATAGAGAGTCTCTAATGGTCGA-TGTGATGGATACAGATGAAGAAGCCAC 140
Query 60 AGGAGATGCAGAGAACCTTGAGGAAGAAGTTACCGCAGAAGAACCGATCCACGATGAGGC 119
||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 141 AGGAGATGCAGAGAACCGTGATGAAGAAGTTACCGCAGAAGAACCGATTCACGATGAGGT 200
Query 120 TGTGGATGCGGTGGAGATTCATGACGAAGAAGTGAAA-AATGGTGATGATGATTGTGATG 178
|||||||||||||||||||||||| |||||||||||| || | ||||||||||||||| |
Sbjct 201 TGTGGATGCGGTGGAGATTCATGAGGAAGAAGTGAAAGAA-GATGATGATGATTGTGAAG 259
Query 179 GATTGGTGAGCGATATCGTATCGGTTATCGAGTTTTTGGATCAGATTAACGGTTATCGAA 238
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 260 GATTGGTGAGCGATATCGTATCGATTGTCGAGTTTTTGGATCAGATTAACGGTTATCGAA 319
Query 239 AAACACAACAGAAAGAATGTTTTAACCTCGTAAGACGATTGAAGATTCTGATTCCTTTTT 298
||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct 320 GAACACAACAAAAAGAATGTTTTAATCTCGTTAGACGATTGAAGATTCTTATTCCATTTT 379
Query 299 TGGAAGAGATTCGAGGATTTGACTCACCAAGTTGCAGGCATTTTGTAAATCGTTTGAGGA 358
|||| ||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 380 TGGATGAGATTCGAGGTTTTGAATCACCAAGTTGCAAGCATTTTTTAAATCGTTTGAGGA 439
Query 359 AAGTGATTCTTGTTGCTAAGAAATTATTAGAAACTTGCAGCAATGGCAGCAAAATCTATA 418
||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 440 AAGTGTTTCTTGCTGCCAAGAAATTATTAGAAACTTGCAGCAATGGCAGTAAAATCTATA 499
Query 419 TGGCATTGGATAGCGAAACAATGATGACGAGGTTTCATTCGATTTACGAAAAGTTGAATC 478
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 500 TGGCATTGGATGGCGAAACAATGATGACGAGATTTCATTCGATTTACGAAAAGTTGAATC 559
Query 479 GTGTTCTTGTTAAAACTCCTTTTGACGAATTGACGATTTCTGAAGATGTGAAAGAAGAGA 538
|||||||||||||| |||||||||| ||||| | |||||||| |||| |||||| ||||
Sbjct 560 GTGTTCTTGTTAAAGCTCCTTTTGATGAATTAATGATTTCTGGTGATGCGAAAGACGAGA 619
Query 539 TTGATGCATTGTGTAAACAACTGAAAAAGGCAAAAAGAAGAACAGATACACAAGACATAG 598
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 620 TTGATTCATTGTGTAAACAACTGAAAAAAGCAAAAAGAAGAACAGATACACAAGACATAG 679
Query 599 AGCTAGCAGTAGACATGATGGTGGTCTTTTCAAAAACCGATCCTCGAAACGCAGATAGCG 658
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 680 AGCTAGCAGTAGACATGATGGTGGTATTCTCAAAAACCGATCCTCGAAACGCAGATAGCG 739
Query 659 CTATAATCGAGAGGCTTGCGAAAAAGCTTGAGCTACAAACAATTGAGGATTTGAAGACGG 718
| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 740 CGATAATAGAGAGGCTAGCGAAAAAGCTTGAGCTACAAACAATTGATGATTTAAAGACAG 799
Query 719 AAACCATAGCCATAAAAAGCTTAATCCAAGAAAAAGGAGGGTTGAATATAGAGACTAAAC 778
|||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 800 AAACTATAGCCATACAAAGCTTAATCCAAGACAAAGGAGGTTTGAACATAGAGACTAAAC 859
Query 779 AACATATCATTGAGCTTCTTAACAAGTTCAAGAAGCTTCAAGGTCTTGAAGCTACCGACA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 AACATATCATTGAGCTTCTTAACAAGTTCAAGAAGCTTCAAGGTCTTGAAGCTACCGACA 919
Query 839 TTCTCTACCAACCTGTCATCAATAAAGCATTCACCAAGTCGACTTCCCTAATATTACCTC 898
||||||||||||| ||||||||||||||| |||||||||| || || |||||||||||||
Sbjct 920 TTCTCTACCAACCCGTCATCAATAAAGCAATCACCAAGTCAACGTCTCTAATATTACCTC 979
Query 899 ACGAGTTTTTGTGTCCTATCACTCTCGAAATAATGCTAGATCCGGTTATCATCGCCACTG 958
| ||||||||||||||||| || |||||||||||||| || |||||||||||||||||||
Sbjct 980 ATGAGTTTTTGTGTCCTATAACACTCGAAATAATGCTTGACCCGGTTATCATCGCCACTG 1039
Query 959 GACAGACATATGAAAAGGAGAGTATTCAGAAATGGTTTGATGCGGGGCATAAGACTTGTC 1018
||||||||||||| ||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 1040 GACAGACATATGAGAAGGAGAGTATACAGAAATGGTTTGACGCAGGACATAAGACTTGTC 1099
Query 1019 CGAAAACTAGACAAGAGCTAGATCATCTCTCTCTTGCACCCAA-TTATGCCTTAAAGAAC 1077
| ||||| ||||| ||| |||||||||||||||||||||| || || || |||||||||
Sbjct 1100 CTAAAACAAGACAGGAGTTAGATCATCTCTCTCTTGCACCTAACTT-CGCTTTAAAGAAC 1158
Query 1078 TTGATTATGCAGTGGTGTGAGAAGAACAATTTCAAGATTCCAGAGAAAGAAGCAAGTCCC 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1159 TTGATTATGCAGTGGTGTGAGAAGAACAATTTCAAGATTCCAGAGAAAGAAGTAAGTCCT 1218
Query 1138 CACTCAGAAAATGAGCAGAAAGATGAGGTATCTTTGCTGGTGGAAGCTTTATCGTCAAGC 1197
||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1219 GACTCACAAAATGAGCAGAAAGATGAGGTCTCTTTGCTGGTGGAAGCGTTATCGTCAAGC 1278
Query 1198 CATTTGGAAGAACAAAGAAGATCAGTGAAGCAGATGCGTTTGCTCG-CACGAGAAAATCC 1256
|| ||||||||||| |||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1279 CAACTGGAAGAACAACGAAGATCAGTGAAGCAGATGCGTTTGCTAGCCA-GAGAAAATCC 1337
Query 1257 CGAGAACCGAGTTTTAATAGCGAATGCAGGAGCGATCCCTCTGTTAGTTCAACTCCTTTC 1316
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1338 CGAGAACCGCGTTTTAATAGCGAATGCAGGAGCGATTCCTTTGTTAGTTCAACTCCTTTC 1397
Query 1317 TTACCCTGATTCTGGAATCCAAGAGAACGCAGTAACGACTTTGTTGAATCTATCTATCGA 1376
|||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1398 TTACCCTGATTCAGGAATCCAAGAAAACGCGGTAACGACATTGTTGAATCTATCTATCGA 1457
Query 1377 TGAGGTCAACAAGAAACTCATCTCAAATGAAGGAGCTATTCCAAACATTATTGAAATCCT 1436
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1458 CGAGGTCAACAAGAAACTCATTTCAAATGAAGGAGCTATTCCAAACATTATTGAAATCCT 1517
Query 1437 TCAAAATGGAAACAGAGAGGCAAGAGAGAACTCTGCTGCAGCTTTGTTTAGTTTATCGAT 1496
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 TGAAAATGGAAACAGAGAGGCAAGAGAGAACTCTGCTGCAGCTTTGTTTAGTTTATCGAT 1577
Query 1497 GCTCGATGAGAACAAAGTAACTATCGGATTATCAAATGGGATCCCGCCTTTAGTCGATTT 1556
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1578 GCTCGATGAGAACAAAGTAACTATCGGATTATCGAATGGGATACCGCCTTTAGTCGATTT 1637
Query 1557 ACTGCAGCATGGGACATTAAGAGGGAAGAAAGATGCTCTCACTGCACTCTTTAACTTATC 1616
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1638 ACTACAACATGGGACATTAAGAGGGAAGAAAGATGCTCTCACTGCACTCTTTAACTTGTC 1697
Query 1617 CCTTAATTCAGCTAATAAAGGGAGAGCCATTGATGCTGGAATCGTTCAACCTTTGCTCAA 1676
||||| |||||||||||||| ||||| || |||||||| || |||||||||||||| ||
Sbjct 1698 TCTTAACTCAGCTAATAAAGGAAGAGCTATCGATGCTGGTATTGTTCAACCTTTGCTTAA 1757
Query 1677 CCTTCTGAAAGATAGAAACTTAGGGATGATCGATGAAGCGCTTTCGATTCTGTTGCTTCT 1736
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1758 CCTTCTTAAAGATAAAAACTTAGGGATGATCGATGAAGCGCTTTCGATTCTGTTGCTGCT 1817
Query 1737 TGCATCACACCCTGAAGGACGTCAAGCCATTGGACAACTCTCCTTCATTGAAACGCTTGT 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1818 TGCATCACACCCTGAAGGACGTCAAGCCATTGGACAACTCTCCTTCATTGAAACACTTGT 1877
Query 1797 GGAATTTATCAGACAAGGCACCCCGAAGAACAAAGAGTGTGCGACCTCGGTGCTACTTGA 1856
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1878 GGAATTCATCAGACAAGGCACCCCGAAAAACAAAGAGTGTGCGACCTCGGTGCTGCTTGA 1937
Query 1857 ACTAGGCTCTAACAACTCATCTTTTATCCTCGCTGCGCTTCAATTCGGCGTCTATGAATA 1916
|||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||
Sbjct 1938 ACTAGGCTCTAACAACTCGTCTTTTATCCTCGCAGCGCTTCAATTCGGAGTTTATGAATA 1997
Query 1917 TCTTGTAGAAATAACCACATCTGGAACAAACAGAGCTCAAAGAAAAGCAAATGCTCTTAT 1976
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1998 TCTGGTAGAAATAACCACCTCTGGAACAAACAGAGCTCAGAGAAAAGCAAATGCTCTTAT 2057
Query 1977 ACAACTCATAAGCAAATCTGAACAAATTTAGACTTGTTCTAAAC-TTTTCATCTTGTACT 2035
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2058 ACAACTCATAAGCAAATCTGAACAAATTTAGACTTGTTCTAAACATTTTCATCTTCTACT 2117
Query 2036 G 2036
|
Sbjct 2118 G 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100903095450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5