BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949069
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28672.1 | Symbols: | transposable element gene | chr5:1070... 1155 0.0
AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 627 1e-178
AT5G28712.1 | Symbols: | transposable element gene | chr5:1076... 571 7e-162
AT5G28667.1 | Symbols: | pseudogene, hypothetical protein | ch... 510 2e-143
AT3G32904.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 316 4e-85
> AT5G28672.1 | Symbols: | transposable element gene | chr5:10700385-10701826
FORWARD LENGTH=1442
Length=1442
Score = 1155 bits (625), Expect = 0.0
Identities = 768/834 (92%), Gaps = 21/834 (3%)
Strand=Plus/Plus
Query 804 ATGCCAATTGCGATCACAAGGTGTACACAATCTAAATTATGAAGAGAGAATTGAATTATG 863
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCAATTGCGATCACAAGGTGTACATAATCTAAATTATGAAGAGAGAATTGAATTATG 60
Query 864 GAATTTGGAAAATGAGCAATTTGAAGAGTTAATAATTCAACCGTCATTGAGTTACTACAA 923
|||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 61 AAATTTGGAAAATGAGCAAATTGAACAGTTAATAATTCAACCGTCATTGAGTTGCTACAA 120
Query 924 TCGAAATTTTGAAAGAGGGCCAATTCAAACAGATGGCGGGTTGGGATGGAGAAATATTTG 983
||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 121 TCGAACTTTTGAAAGAGGACCAATTCAAACAGATGGCGGGATGGGATGGAAAAATACTTG 180
Query 984 GCGTCGAATACAAGAAGAT-AGTGCTGCTTGTCTTCAGTTACTACGAATGTCTCTTGATT 1042
||||||||||||||||||| || ||||||| |||||| ||||||||||||||||| ||||
Sbjct 181 GCGTCGAATACAAGAAGATAAG-GCTGCTTATCTTCAATTACTACGAATGTCTCTGGATT 239
Query 1043 GTTTTAGATCATTATGTGACGTAATGGAAATACGTTATGGATTACA-ACCTACATTGAAT 1101
|||||||||||||||||||| ||||||||| | ||||||||||| | |||||| |||||
Sbjct 240 GTTTTAGATCATTATGTGACATAATGGAAACAAGTTATGGATTA-ATTCCTACAATGAAT 298
Query 1102 GTTAGCATTGAAAAGAGTGTTGCCATGTTTTTACGGATATGTGGACACAATGAAGTTCAA 1161
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTAGTATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTGGACACAATGAAGTTCAA 358
Query 1162 AGAGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGAATCGGAAATTTTTTGAA 1221
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 AGAGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGAATCAGAAATTTTTTGAA 418
Query 1222 GTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAACAAGACAAGAA 1281
||||||||||||||| || |||||||||||||||||||||| || ||||||| |||||||
Sbjct 419 GTCCTTAGAGCGACATAGATACTTGCTTGTGATTATATCAAAACGCCAACAACACAAGAA 478
Query 1282 CTACGTCGAATTCCTAAAAAACTACAAAGGGATCGAAGA-TATTGGCCATATTTCAGTGG 1340
||||||||||||||| || ||||| ||| ||||| || | |||||| ||||||| |||||
Sbjct 479 CTACGTCGAATTCCTGAATAACTATAAATGGATC-AACAATATTGGTCATATTTTAGTGG 537
Query 1341 ATTTGTTGGAGCTATAGATGGAGTTCATGTATGTGTTAAGGTGAAGCCTGAACTACAAGG 1400
||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 538 ATTTGTTGGAGGTATAAATGGAGTTCATGTATGTGTTAAGGTGAAGCATTAACTACAAGG 597
Query 1401 AATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATATGTGATATAAA 1460
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 598 AATGTATTGGAATCGACACGATAGAACATCGTTTAATATCAAGGCCATATGTGATATAAA 657
Query 1461 TATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGATACAGCAGTTCT 1520
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 658 TATGTTGTTTACATATGTTTGGAATGGAGCACTTGGATCGTGCCACGATACAGTAGTTCT 717
Query 1521 AACGATGGCACAAGAT-------CT---TTT-----GCCTCCAAGAGATAAGTATTATGT 1565
|||||||||||||||| || ||| |||||| |||||||||||||||||
Sbjct 718 AACGATGGCACAAGATAATGATTCTGAATTTCCTTTGCCTCCTAGAGATAAGTATTATGT 777
Query 1566 AGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGATCTTC 1619
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 778 AGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCATCTTATCGATCTTC 831
Score = 243 bits (131), Expect = 6e-63
Identities = 158/171 (92%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 1620 AATTTCGAATTATTTTGATGAGGATTTTGTTGAAGTAATGGGAGATACAAATATCAACAA 1679
||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1059 AATGTCGAATTATTTTGACGAGAATTTTGTTGAAGTAATAGGAGATACAAATATCAACAA 1118
Query 1680 CGTAAATTCTGAGAATGATCTTGATGACATGGAGAGAGGTAGTATACCTGACGGAAATCA 1739
| ||||||||||||||||||| |||||| | ||||| || |||||||||| ||||||||
Sbjct 1119 CATAAATTCTGAGAATGATCTAGATGAC-CGAAGAGAAGTGGTATACCTGATGGAAATCA 1177
Query 1740 TATGGC-AAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 1789
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TATGGCAAAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 1228
> AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:11627225-11630679 FORWARD
LENGTH=3455
Length=3455
Score = 627 bits (339), Expect = 1e-178
Identities = 621/755 (82%), Gaps = 28/755 (4%)
Strand=Plus/Plus
Query 795 TTTTCGTATATGCCAATTGCGAT-CACAAGGTGTACACAA--TCTAAATTATGAAGAGAG 851
|||||||||||| || ||||| | ||| ||| || | ||| ||||| || || || |
Sbjct 2251 TTTTCGTATATGTCAGTTGCG-TGCACGAGGAGT-C-CAATTTCTAAGCTACGAGGAAAT 2307
Query 852 AATTGAATTATGGAATTTGGAAAATGAGCAATTTGAAGAGTTAATAATTCAACCGTCATT 911
|||||| | | |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2308 AATTGAGCTGTAGAATTTGGAAAACGAGCAATTTGAAGAGTTAATAATTCAACCAACATT 2367
Query 912 GAGTTACTACAATCGAA-ATTTTGAAAGAGGGCCAATTCAAACAGATGGCGGGTTGGGAT 970
|||||||||||||| || ||||| |||||| ||||| |||||| |||| || |||||||
Sbjct 2368 GAGTTACTACAATC-AATATTTTCAAAGAGCACCAATCCAAACAAATGGTGGTTTGGGAT 2426
Query 971 GGAG-A-AATATTTGGCGTCGAATACAAGAAGATAG-TGCTGCTTGTCTTCAGTTACTAC 1027
|| | ||||||||| |||| | ||||||||| | || ||||||||| || ||| |||
Sbjct 2427 --AGCACAATATTTGGTGTCGTCTGCAAGAAGAT-GATGATGCTTGTCTACAATTATTAC 2483
Query 1028 GAATGTCTC-TTGATTGTTTTAGATCATTATGTGACGTAATGGAAATACGTTATGGATTA 1086
|||||||| ||| |||||| || |||||||||| | | ||||| |||||| ||
Sbjct 2484 AAATGTCTCTTTG-TTGTTTCGGAACATTATGTGAAACACTTCAAATAAATTATGGGTTG 2542
Query 1087 CAACCTACATTGAATGTTAGCATTGAAA-AGAGTGTTG-CCATGTTTTTACGGATATGTG 1144
||||| |||| |||||| |||||| ||| |||||| || | |||||| |||||| |||||
Sbjct 2543 CAACCAACATCGAATGTAAGCATT-AAAGAGAGTG-TGACAATGTTTCTACGGACATGTG 2600
Query 1145 GACACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGA 1204
| |||||||||||||||||||||||||| || | |||||||| || ||||| |||||||
Sbjct 2601 GTCACAATGAAGTTCAAAGAGATGTTGGATTGCTATTTGGACAAAATCAAGAGACAGTGA 2660
Query 1205 ATCG-GAAATTTTTTGAAGTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAG 1263
| | |||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||
Sbjct 2661 A-GGAGAAATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAG 2719
Query 1264 ACTCCAACAAGACAAGAACTACGTCGAATTCCTAAAAAACTACAAAGG-GATCGAAGATA 1322
||||||||||||||||||||| ||||||| | || || | ||| | | |||||||||
Sbjct 2720 ACTCCAACAAGACAAGAACTATACCGAATTCATGAACAATTGCAA-GTAGCTCGAAGATA 2778
Query 1323 TTG-GCCATATTTCAGTGGATTTGTTGGAGCTA-TAGATGGAGTTCATGTATGTGTTAAG 1380
| | ||||||||| | ||||||| ||||||| | | |||||||||||||| || ||||||
Sbjct 2779 T-GAGCCATATTTTAATGGATTTATTGGAGCAAAT-GATGGAGTTCATGTCTGCGTTAAG 2836
Query 1381 GTGAAGCCTGAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATC 1440
||||| || || |||||||||| |||||| ||||||| | ||||||||| || || ||
Sbjct 2837 GTGAAACCCGAGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTC 2896
Query 1441 ATGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCG 1500
||||||||||||||| | ||||||||||| ||||||||||||||| ||| ||| ||||
Sbjct 2897 ATGGCAATATGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCT 2956
Query 1501 TGTCACGATACAGCAGTTCTAACGATGGCACAAGA 1535
| ||| |||||||||||||| || || ||||||||
Sbjct 2957 TATCATGATACAGCAGTTCTCACAATCGCACAAGA 2991
> AT5G28712.1 | Symbols: | transposable element gene | chr5:10760797-10762070
REVERSE LENGTH=1274
Length=1274
Score = 571 bits (309), Expect = 7e-162
Identities = 599/735 (81%), Gaps = 36/735 (5%)
Strand=Plus/Plus
Query 817 TCACAAGGTGT-ACACAATCTAAATTATGAAGAGAGAATTGAATTATGGAATTTGGAAAA 875
|||||| || | ||||| ||||| ||||||| ||||| | || || ||||||||| ||||
Sbjct 1 TCACAAAGT-TCACACACTCTAAGTTATGAATAGAGACTCGAGTTGTGGAATTTGAAAAA 59
Query 876 TGAGCAATTTGAAGAGTTAATAATTCAACCGTCATTGAGTTACTA-CAATCGAAATTTTG 934
|||||||||||| ||||| |||||||||| ||||||| |||||| || ||| |||||
Sbjct 60 TGAGCAATTTGAGGAGTTGCTAATTCAACCATCATTGAATTACTATGAA-CGATATTTTC 118
Query 935 AAAGAGGGCCAATTCAAACAGATGGCGGGT-TGGGATGGAGAAATATTTGG-CGTCGAAT 992
||||||| || |||||||| || || ||| | ||||||||||| |||||| | |||| |
Sbjct 119 AAAGAGGACCTGTTCAAACAAATTGC-GGTCTAGGATGGAGAAACATTTGGTC-TCGACT 176
Query 993 ACAA-GAAGATAGTGCTGCTTGTCTTCAGTTACTACGAATGTCTCTTGATTG-TTTTAGA 1050
| || ||||||| |||||||||||| ||||| ||||| ||||| ||||| || || | |
Sbjct 177 A-AATGAAGATAATGCTGCTTGTCTACAGTTGCTACGGATGTCACTTGA-TGCGTTCACA 234
Query 1051 TCATTATGTGACGTAATGGA-AATA-C-GTTATGGATTACAACCT-A-CATTGAATGTTA 1105
|| | |||| | || | | || | | ||||||||||||| | | |||||||||| |
Sbjct 235 ACA-T-TGTGTCATATTCTACAA-ACCAATTATGGATTACAA--TAACCATTGAATGTAA 289
Query 1106 GCATTGAAA-AGAGTGTTGCCATGTTTTTACGGATATGT-GGACACAATGAAGTTCAAAG 1163
||| | ||| |||||||||| || ||| | ||||||||| || ||||||||||||||| |
Sbjct 290 GCA-TCAAAGAGAGTGTTGCTATATTTCTCCGGATATGTAGG-CACAATGAAGTTCAACG 347
Query 1164 AGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGAATCG-GAAA-TTTTTTGAA 1221
||||||||| ||||| |||||||||| |||||||||||||| | |||| |||||||||
Sbjct 348 AGATGTTGGATTACGGTTTGGACGAAATCAAGAAACAGTGAA--GAGAAAGTTTTTTGAA 405
Query 1222 GTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAACAAGACAAGAA 1281
|| || | ||| || || ||||||||||||||||||||||| |||||||||| |||||||
Sbjct 406 GTTCTGACAGCTACTGAATTACTTGCTTGTGATTATATCAAAACTCCAACAACACAAGAA 465
Query 1282 CT-ACGTCGAATTCCTAAAAAACTACAAAGGGATCGA-AGATATTGGCCATATTTCAGTG 1339
| || | | |||||| || || | |||| || ||||| ||| |||||| | ||
Sbjct 466 -TGACATAGGATTCCTGAACGGCTGTAGTTGGAT-GACTGATATGGGCGATATTTTACTG 523
Query 1340 GATTTGTTGGAGCTATAGAT-GGAGTTCATGTATGTGTTAAGGTGAAGCCTGAACTACAA 1398
||||||||||||||| ||| ||| |||||| ||| ||||| ||||| || | | | |||
Sbjct 524 GATTTGTTGGAGCTACGGATGGGA-TTCATGCATGCGTTAATGTGAAACCCGCATTGCAA 582
Query 1399 GGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATATGTGATATA 1458
|||||||||||||||| ||| |||| |||||| ||||| |||||||||||||||||| ||
Sbjct 583 GGAATGTATTGGAATCAACATGATATAACATCTTTTAACATCATGGCAATATGTGATCTA 642
Query 1459 AATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGATACAGCAGTT 1518
|||||||| || ||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 643 AATATGTTATTCACATATGTTTGGAATGGAGCACCTGGATCATGTCATGATACAACAGTT 702
Query 1519 CTAACGATGGCACAA 1533
|| ||||||||||
Sbjct 703 CTTGTGATGGCACAA 717
> AT5G28667.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10690062-10691087 FORWARD LENGTH=1026
Length=1026
Score = 510 bits (276), Expect = 2e-143
Identities = 377/423 (89%), Gaps = 18/423 (4%)
Strand=Plus/Plus
Query 1212 ATTTTTTGAAGTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAAC 1271
||||||||||| |||||||| |||| |||||||||||||||||| ||||||||| |||||
Sbjct 161 ATTTTTTGAAGGCCTTAGAGTGACAAAGTTACTTGCTTGTGATTGTATCAAGACGCCAAC 220
Query 1272 AAGACAAGAACTACGTCGAATTCCTAAAAAACTACAAAGGGATCGAAGATATTGGCCATA 1331
|| |||||||||||||||||||| | ||||| |||||| |||||||||||||||| ||||
Sbjct 221 AACACAAGAACTACGTCGAATTCATGAAAAAGTACAAATGGATCGAAGATATTGGTCATA 280
Query 1332 TTTCAGTGGATTTGTTGGAGCTATAGATGGAGTTCATGTATGTGTTAAGGTGAAGCCTGA 1391
||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 281 TTTTAGT-GATTTGTTGGAGCTATAGATGGAGTTCATG--TGTGTTAAGGTGAAGCCTAA 337
Query 1392 ACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATATG 1451
|||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 338 ACTACAAGGAATGTATTGGAATTGACACGATAGAACATCATTTAATATCATGGCCGTATG 397
Query 1452 TGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGATAC 1511
||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||
Sbjct 398 TGATATAAATATGTTGTTTTCATATGTTTGAAATAGAGCACATGGATCGTGTCACGATAC 457
Query 1512 AGCAGTTCTAACGATGGCACAAGATC-T--TT-TG-----CCT---CCA---AGAGATAA 1556
|| |||||||||||||| ||||||| | || || ||| || ||| | ||
Sbjct 458 AGTAGTTCTAACGATGGTACAAGATAATGATTATGAATTTCCTTTGCCTCCTAGACACAA 517
Query 1557 GTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGATC 1616
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GTATTATGTAGTTGATTTTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGATC 577
Query 1617 TTC 1619
|||
Sbjct 578 TTC 580
Score = 244 bits (132), Expect = 2e-63
Identities = 169/187 (90%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 1621 ATTTCGAATTATTTTGATGAGGATTTTGTTGAAGTAATGGGAGATACAAATATCAACAAC 1680
||||||||||||||||| ||| |||||| ||||| |||| || |||||||||||||||||
Sbjct 805 ATTTCGAATTATTTTGACGAGAATTTTGATGAAGGAATGAGAAATACAAATATCAACAAC 864
Query 1681 GTAAATTCTGAGAATGATCTTGATGACATGGAGAGAGGTAGTATACCTGACGGAAATCAT 1740
|||||||||||||||||||| |||||||||||||||||| |||||||||| | |||| ||
Sbjct 865 GTAAATTCTGAGAATGATCTAGATGACATGGAGAGAGGTGGTATACCTGATGAAAATTAT 924
Query 1741 ATGGCAAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAAATAC--TTTCC 1798
||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||| |
Sbjct 925 ATGGCAAATATAAGAAAAAATATTGTTGATATGTTATGGGCAACTCAAAATACACTTTTC 984
Query 1799 ATTAAAT 1805
||||||
Sbjct 985 GTTAAAT 991
Score = 239 bits (129), Expect = 8e-62
Identities = 152/163 (93%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1020 GTTACTACGAATGTCTCTTGATTGTTTTAGATCATTATGTGACGTAATGGAAATACGTTA 1079
||||| | |||||||||||||||||||||||||| |||||||| ||||||||| | ||||
Sbjct 4 GTTAC-A-GAATGTCTCTTGATTGTTTTAGATCAATATGTGACATAATGGAAACAAGTTA 61
Query 1080 TGGATTACAACCTACATTGAATGTTAGCATTGAAAAGAGTGTTGCCATGTTTTTACGGAT 1139
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 62 TGGATTACAACCTACATTGAATGTTAGCATTGAAGAGTGTGTTGCCATGTTTTTACGGAT 121
Query 1140 ATGTGGACACAATGAAGTTCAAAGAGATGTTGGGTTACGATTT 1182
||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct 122 ATGTGGATACAATGAAGGTCAAAGAGATGTTGGGTTGCGATTT 164
> AT3G32904.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G30520.1);
Has 249 Blast hits to 117 proteins in 25 species:
Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 5; Plants
- 112; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
| chr3:13451438-13452807 REVERSE LENGTH=993
Length=993
Score = 316 bits (171), Expect = 4e-85
Identities = 213/234 (91%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 22 ATGGGCAATTATCGTTTCAAAGATCCTACACCCCTTGGTAGAGAATTTATCGTTGACAAG 81
||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGGAAATTACCGTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAG 60
Query 82 TTTAACAAGGAGTTTAATCTAAACATAAATTATCGGTTCTTCAAAGAAAAACTTGATCAA 141
|||||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||
Sbjct 61 TTTAACAAGGAGTTTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAA 120
Query 142 CTAAAAAGAAAATACAAGAAATACAAGCATCTTATGAAAGATTCCACGGGCATCTCGGTT 201
||||||||||| |||||||| |||||| | ||||||||| | ||||||||||| ||||||
Sbjct 121 CTAAAAAGAAAGTACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTT 180
Query 202 GATACTACTACATCTGTGATATCGGCATCTAACTCATGGTGGAAAGAGCGTGAA 255
||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 181 GATACTACTACATCTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAA 234
Score = 307 bits (166), Expect = 2e-82
Identities = 190/202 (94%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 581 AGATTCCTACATCCAGAATTCAACAACGAGGTGGAGTCAGGCGTGGAAGTAGTTCGCAAA 640
||||||| || || ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 371 AGATTCCCACGTCTAGAATTCAACAACGAGGTGGACTAAGGCGTGGAAGTAGTTCGCAAA 430
Query 641 GAGGTGCAGGAAACTCCCAAATTTCTACCAGGAGTGGTTCACGAGGAAGCCGTAGAAAAC 700
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 431 GAGGTGCAGGAAACTTCCAAATTTCTACCAGGATTGGTTCACGAGGAAGTCGTAGAAAAC 490
Query 701 AATCATTTGAAACAACCCTAACAGATACAATAACTGGCTTCAGAGAGTTTCAGCGCCAAA 760
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 491 AATCATTTGAGACAACTCTAACAGATACAATAACTGGCTTAAGAGAGTTTCAGCGCCAAA 550
Query 761 GTTTACAACAGTTGCGCCCGAA 782
||||||||||| ||||||||||
Sbjct 551 GTTTACAACAGATGCGCCCGAA 572
Score = 211 bits (114), Expect = 2e-53
Identities = 131/139 (94%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 349 CCTCAATTCTCTGTGAACCAAAGAAGAGAACAGCTGAG-GAATGATGGTCTGGATAATGA 407
||||||||||||||||||||||||||||||||| || | |||||||||| |||| |||||
Sbjct 235 CCTCAATTCTCTGTGAACCAAAGAAGAGAACAGTTG-GTGAATGATGGTTTGGACAATGA 293
Query 408 TGAAGGTCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCCTGA 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 294 TGAAGGTCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCTTGA 353
Query 468 GCCACAAGAAAATGAAGAG 486
| |||||||||| ||||||
Sbjct 354 GACACAAGAAAACGAAGAG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90210379365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5