BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949088

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42223.1 | Symbols:  | Defensin-like (DEFL) family protein |...   370    4e-102


> AT5G42223.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:16878610-16878945 REVERSE LENGTH=255
Length=255

 Score =  370 bits (200),  Expect = 4e-102
 Identities = 232/248 (94%), Gaps = 0/248 (0%)
 Strand=Plus/Plus

Query  21   ATGGCTATCACCAAGAAATGTTTTGCTGCATTTGTTCTCACCCTCCTCTTTGTCATGCCT  80
            |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct  1    ATGGCTATCACCAAGAAATGTTTTGCCGCATTTGTACTCATCCTCCTCTTTGTCATGCCT  60

Query  81   TTCGTTTATTGCTCGGAATCCGATAACACTTATGGTTTTGAAATAAAGCAAGAAGATAAA  140
            |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||
Sbjct  61   TTCGTTTATTGCTCGGAATTAGATAACACTTCTGGTTTTGAAATAAAGCAAGAAGATAAA  120

Query  141  TGCTACAGCCCAGAACCGTGTAAAAATGGGCCCGAAGGATGCTTGtttttttGTGCACGA  200
            |||||| ||||||||||||||||||||||   ||||||||||||||| ||||||| | ||
Sbjct  121  TGCTACGGCCCAGAACCGTGTAAAAATGGTTACGAAGGATGCTTGTTCTTTTGTGTAAGA  180

Query  201  ATAGCCTATGACTTATATGGTGAATGTATTATGAAGCCTGATCATCAAAAGCATTGTTGT  260
            ||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct  181  ATAGCCTATTACTTATATGGGGAATGTACTATGAAGCCTGATCATCAAAAGCATTGTTGT  240

Query  261  TGTGTGAC  268
            ||||||||
Sbjct  241  TGTGTGAC  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5