BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949096
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42210.1 | Symbols: | Major facilitator superfamily protein... 1304 0.0
> AT5G42210.1 | Symbols: | Major facilitator superfamily protein
| chr5:16866040-16870887 FORWARD LENGTH=1677
Length=1677
Score = 1304 bits (706), Expect = 0.0
Identities = 830/891 (93%), Gaps = 4/891 (0%)
Strand=Plus/Plus
Query 1 ATACTTACCGGGATTACATCATGTGCATTCGTTTGCGCCACTCTTTGC-GCTCGATTTTT 59
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 490 ATACTTACCGGGATTACATCATGTGCATTCGTTTGCGCCAATCTTT-CTGCTCGATTTTT 548
Query 60 ATCTATTGCCACCACATTTCAGCAGCAATAGCAATTTTATCAACGCTGTATATGAGGGTT 119
|||||||| | |||||||||||||||| | ||||||||||||| ||||||||||| ||
Sbjct 549 ATCTATTGGCGTGACATTTCAGCAGCAATGGGAATTTTATCAACGTTGTATATGAGGCTT 608
Query 120 TTCCTACCAGATTCGATCCGAGATAATAGCCTCGGTGTTCCCAGTATTTTAAGTGAGAAA 179
|||||||| |||||||||||||| ||||||||||||| ||||| | || ||| |||||||
Sbjct 609 TTCCTACCGGATTCGATCCGAGACAATAGCCTCGGTGCTCCCATTGTTATAAATGAGAAA 668
Query 180 TTAAGTTCTCCATTACTTGAAGATTGTCCTGCACATAGAAATAGAATATTTAGAGCAATT 239
|| |||||||| ||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 669 TTGAGTTCTCCTTTACTTGAAGATTGTCCAGGACATAGAAATAGGATATTTAGAGCAATT 728
Query 240 CGATCAGTACGGGAAATGGCATCTTTAATGAAAAGCAGCGTTCCACTTTCACAAGTTGCG 299
|| | |||| |||||||| ||| |||||| ||| ||||||||||||| |||||||||
Sbjct 729 CGTTTGGTACATGAAATGGCTTCTCTAATGAGAAGTAGCGTTCCACTTTTTCAAGTTGCG 788
Query 300 ATGGTATCATTCTTCAGTAGTCTTGCTGAGGCAGGTCTACATGCTTCATCTATGTACTAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATGGTATCATTCTTCAGTAGTCTTGCTGAGGCAGGTCTACATGCTTCATCTATGTACTAT 848
Query 360 TTAAAGGCCAAGTTTCACTTTAACAAAGACCAGTTTGCAGACTTGATGATCATATTTGGC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 849 TTAAAGGCCAAGTTTCACTTTAACAAAGACCAGTTTGCAGACTTGATGATCATAGTTGGC 908
Query 420 GCAGCCGGATCTATTTCACAGTTGCTCTTTATGCCCATTCTAGTCCCTGCTTTAAAAGAG 479
||| | |||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 909 GCATCTGGATCTATTTCACAGTTGCTCTTTATGCCCGTTCTAGTTCCTGCTTTAAAAGAG 968
Query 480 GAGAGACTGCTCTCAATTGGTCTTTTCTTTGGTTGTGCCCATATGTTCTTGCTATGTGTG 539
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 969 GAGAGACTGCTCTCAATTGGTCTTTTCTTTGGTTGTGCCCATATGTTCCTACTATGTGTG 1028
Query 540 GCATGGTCCTCATGGGTTCCATATATGGCAGCCATATTTGCATTTTTCTCAATATTTCCA 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1029 GCATGGTCCTCATGGGTTCCATATATGGCAGCCATATTTGCACTTTTCTCAATATTTCCT 1088
Query 600 -CAATCGTGTATGCGAAGCATTGTCTCCAAACAAGTAGAATCATATGAACAGGGGAAAGC 658
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1089 TCA-TCGTGTATGCGAAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGC 1147
Query 659 CCAAGGGATTATTTCAAGCATATGTTCCCTTGCAAATGTCATTTCCCCGCTTGCATTTTC 718
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1148 CCAAGGAATTATTTCAAGCATATGTTCCCTTGCAAATGTCATTTCCCCGCTAGCATTTTC 1207
Query 719 ACCTCTAACAGATTGGTTTCTGTCAGAAAGAGCCCCATTTAATTTCCCAGGATTCAGTAT 778
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1208 ACCTCTAACAGATTGGTTTCTGTCTGAAAGAGCCCCATTTAATTTCCCAGGGTTCAGTAT 1267
Query 779 AATGTGTGCGGGATTTACGATGACTATAGCTTTCATCCAAAGCCTCATGATCAGAGCAAC 838
|||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |
Sbjct 1268 AATGTGTGCGGGATTTGCCATGACTATAGCTTTCATCCAAAGCCTGATGATCAGAGCAGC 1327
Query 839 AACTCCAATATCAGATATGGGATCTCCATAATGCAGTTAGCTTAAAACCAT 889
||| |||||||||| |||||||||||||||| ||||| || ||||||||
Sbjct 1328 AACACCAATATCAGTTATGGGATCTCCATAACACAGTTTCCTCAAAACCAT 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5