BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949097

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42210.1 | Symbols:  | Major facilitator superfamily protein...   641    0.0  


> AT5G42210.1 | Symbols:  | Major facilitator superfamily protein 
| chr5:16866040-16870887 FORWARD LENGTH=1677
Length=1677

 Score =  641 bits (347),  Expect = 0.0
 Identities = 390/411 (95%), Gaps = 2/411 (0%)
 Strand=Plus/Plus

Query  13   TCTCTTAACAATGGAGGAAACGACGACCTTTCATGGACTAGGACACCTCTTC-TTCACAA  71
            |||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct  39   TCTCTTAAAAATGGAGGAAACGACGACCTTCCATGGACTAGGACACCTCTTCATT-ACAA  97

Query  72   TCTTCTTGTACTGCTTCTCATCATTCATCGTGGCTCCTGCGATAACCGATATCAGCATGG  131
            ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct  98   TCTTCTTGTACTGCTTCTCATCATTCATCGTGGCTCCGGTGATAACCGACATCAGCATGG  157

Query  132  CTGCGCTATGTCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAAC  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  158  CTGCGCTATGTCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAAC  217

Query  192  AAGTTATCACGGGAGTGGGATCGTTGATGATGATGCCATTGATGGGAAGCTTGTCGGACA  251
            |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||
Sbjct  218  AAGTTATCACGGGAGTGGGATCATTGATTATGATGCCATTGGTGGGAAGCTTGTCAGACA  277

Query  252  AGCATGGTAGAAAATGTTTGCTTACTCTTCCAATGACACTCCACATTTTGCCTCTTGCGA  311
            ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct  278  AGCATGGGAGAAAATGTTTGCTTACTCTTCCAATGACACTCAACATTTTACCTCTTGTGA  337

Query  312  CATTAGCGTATAGTAGAGGGACGACCATCTTCTACATTTACTATGTACTCAAGACTTTCA  371
            |||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||
Sbjct  338  CATTAGCGTATAGTAGAGGGGCAACCATCTTCTACATGTACTATGTACTCAAGACTCTCA  397

Query  372  CTTCGATAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCTTATGTGG  422
            ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  398  CTTCGATAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCGTACGTGG  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5