BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949103
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42180.1 | Symbols: | Peroxidase superfamily protein | chr5... 1515 0.0
> AT5G42180.1 | Symbols: | Peroxidase superfamily protein | chr5:16852630-16854224
FORWARD LENGTH=1229
Length=1229
Score = 1515 bits (820), Expect = 0.0
Identities = 935/992 (94%), Gaps = 2/992 (0%)
Strand=Plus/Plus
Query 4 TCGAAAAGTTTGTTGAAATGAATGCACACATGCTCAATCTCCTTGCCATGGTCATCTTCG 63
|||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 56 TCGAAAAGTTTGTTAAAATGAATGCACACATGCTCAATCTCCTTGTCATAGTCATTTTTG 115
Query 64 TAGTTACTTTCGATGTCCAAGCACTCAGTCCTCACTACTACGACCATACATGTCCACAAG 123
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 116 TAGTTTCTTTCGATGTCCAAGCACTCAGTCCTCACTACTACGACCATACTTGTCCACAAG 175
Query 124 CCGACCACATTGTCACCAATGCAGTCAAGAAAGCCATGTCAAATGACAAAACTGTCCCTG 183
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 176 CCGACCACATTGTAACCAATGCAGTCAAGAAAGCCATGTCAAACGACCAAACTGTCCCTG 235
Query 184 CCGCGCTTTTGAGGATGCATTTCCACGACTGTTTCGTCAGAGGATGTGATGGGTCAGTTC 243
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 236 CTGCGCTTTTGAGGATGCATTTCCACGACTGTTTCGTCAGAGGATGTGATGGCTCAGTTC 295
Query 244 TTTTAGACTCAAAGGGAAAGAACAAAGCAGAGAAAGATGGACCTCCTAACATATCACTAC 303
| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 296 TCTTAGACTCTAAGGGGAAGAACAAAGCAGAGAAAGATGGACCTCCTAACATCTCACTCC 355
Query 304 ATGCATTTTATGTGATTGACAATGCAAAGAAGGCATTAGAAGAGCAATGTCCCGGTATCG 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 356 ATGCATTTTATGTGATTGACAATGCAAAGAAGGCATTAGAAGAACAATGTCCCGGTATCG 415
Query 364 TCTCTTGCGCCGACATTCTTTCACTCGCTGCAAGAGATGCTGTCGCTCTCTCAGGAGGGC 423
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 416 TCTCTTGCGCCGACATTCTTTCACTTGCGGCAAGAGATGCTGTCGCTCTCTCAGGAGGGC 475
Query 424 CAACATGGGCAGTGCCAAAAGGTAGAAAAGATGGAAGAATTTCAAAGGCAATAGAAACAA 483
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 476 CTACATGGGCAGTGCCAAAAGGGAGAAAAGATGGAAGAATATCAAAGGCAATAGAAACAA 535
Query 484 GACAACTACCAGCTCCTACTTTCAACATCTCTCAATTGCGTCAAAATTTTGGCCAAAGAG 543
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 GACAACTACCAGCTCCTACTTTCAACATTTCTCAATTGCGTCAAAATTTTGGCCAAAGAG 595
Query 544 GCCTCTCTATGCATGATCTTGTTGTTCTCTCTGGAGGTCACACACTAGGATTCGCCCACT 603
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 596 GCCTCTCTATGCATGATCTTGTTGCTCTCTCTGGAGGTCATACACTAGGATTCGCCCACT 655
Query 604 GCTCATCGTTCCAGAATAGGCTCCATAACTTCAATACACAAAAGGAGATTGATCCAACGC 663
| |||||||||||||||||||||||||| ||||| |||||||||||| |||| ||||| |
Sbjct 656 GTTCATCGTTCCAGAATAGGCTCCATAAATTCAACACACAAAAGGAGGTTGACCCAACAC 715
Query 664 TAAACCCATCGTTAGCAGCAAGCTTGGAGGGAGTGTGTCCAGCCCATAACAAGGTGAAGA 723
||||||| || || ||||| || |||||||||||||| || |||||||||| ||||||||
Sbjct 716 TAAACCCCTCATTCGCAGCCAGGTTGGAGGGAGTGTGCCCGGCCCATAACACGGTGAAGA 775
Query 724 ACGCTGGATCGACCTTGGATGGAACCGTGACGTCATTTGACAATATCTACTACAAGATGC 783
| |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 ATGCTGGATCGAACATGGATGGAACCGTGACGTCATTCGACAATATCTACTACAAGATGC 835
Query 784 TTATTCAAGGCAAGTCACTATTCTCATCCGACGAAGCGCTTCTCGCAGTGCCCTCTACTA 843
|||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 836 TTATCCAAGGCAAGTCACTATTCTCATCCGACGAATCGCTTCTTGCAGTACCCTCTACTA 895
Query 844 AGAAACTCGTGGC-AAAGTACGCGAGTTCCAACGAAGAGTTCGAGAGGGCTTTTGTGAAA 902
||||||||||||| ||| || || | ||||||||||||||||||||||||||||||||||
Sbjct 896 AGAAACTCGTGGCCAAA-TATGCAAATTCCAACGAAGAGTTCGAGAGGGCTTTTGTGAAA 954
Query 903 TCCATGATCAAGATGAGTAGTATCAGTGGGAGTGGTAATGAGGTCAGACTTAACTGCAGA 962
|| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 955 TCGATGATCAAGATGAGTAGTATCAGTGGGAATGGCAATGAGGTCAGACTTAACTGCAGA 1014
Query 963 AGGGTTCGCTAGAATCACAATCTACGCTTCCA 994
|||||||||||||||| |||||||||||||||
Sbjct 1015 AGGGTTCGCTAGAATCTCAATCTACGCTTCCA 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5