BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949105
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42150.1 | Symbols: | Glutathione S-transferase family prot... 1544 0.0
> AT5G42150.1 | Symbols: | Glutathione S-transferase family protein
| chr5:16846150-16848279 FORWARD LENGTH=1415
Length=1415
Score = 1544 bits (836), Expect = 0.0
Identities = 935/984 (95%), Gaps = 1/984 (0%)
Strand=Plus/Plus
Query 11 TCTTCCGCCACAAGCTATGAGGAGAGTCACCGGACTTGCTGCTCGCACAATCTCATCCTC 70
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 82 TCTTCCGCCACAAGCTATGAGGAGAGTCACCGGACTTGCCGCGCGCACAATCTCATCCTC 141
Query 71 CGTCGCCATCAATCCTCGGCTCTCTCAAACAATGGCGATTACAACGATTTCTTCCTCCGA 130
||||||||||||| | || ||| ||||| | |||||||||||||| ||||| ||||||||
Sbjct 142 CGTCGCCATCAATTCACGTCTCACTCAATCCATGGCGATTACAACCATTTCATCCTCCGA 201
Query 131 ACCTATCTCCCGAAGATTCGGTGGTCTTCCAGAGATTTCAACGCCGTCTTTTGCCGGCGG 190
||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 202 ACCTATCTCCCGAAGATTCGGTGGTCTTCCAGAGATTAAAACTCCGTCTTTCGCCGGCGG 261
Query 191 ATTCGCTGGGATTGTGTTTTTCTCTGCCGCTGCTGCATCGTCTCTTGGTCAAGAAGTTCA 250
| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 262 AGTCGCTGGGGTTGTGTTCTTCTCTGCCGCTGCTGTATCGTCTCTTGGTCAAGAAGTTCA 321
Query 251 CGCTAAGGAAATGGCTCAGAAGTTTAATCCTAAAGAAGTTGTTCTGTATCAGTACGAGGC 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 322 CGCTAAGGAAATGGCTCAGAAGTTTAATCCTAAAGAAGTTGTTCTGTATCAGTACGAAGC 381
Query 311 TTGCCCTTTCTGCAATAAGGTTAAAGCGTTCTTGGATTACAACAAGATTCCATACAAGAT 370
|||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 382 TTGCCCTTTCTGTAACAAGGTTAAAGCGTTTTTGGATTACAACAAGATTCCATACAAGGT 441
Query 371 TGTTGAAGTGAATCCTATCAGTAAGAAAGAAATCAAATGGTCTGATTATAAGAAGGTGCC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TGTTGAAGTGAATCCTATCAGTAAGAAAGAAATCAAATGGTCTGATTATAAGAAGGTGCC 501
Query 431 TATTCTTACTGTAGATGGTGAACAAATGGTTGATTCTTCAGTGATAATCGATAGCTTATT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TATTCTTACTGTAGATGGTGAACAAATGGTTGATTCTTCAGTGATAATCGATAGCTTATT 561
Query 491 CCAAAAGATGCACCCTGAAATTTCTAAGTCTGAAGAAGATGAAGAGACTAAATGGCGCAA 550
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 562 CCAAAAGATGCACCCTGAAATTTCCAAGTCCGAAGATGATGAAGAGACTAAATGGCGCAA 621
Query 551 GTGGGTGGACAATCATCTTGTGCATCTTTTGTCACCAAACATTTACAGGAATACTTCAGA 610
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 622 GTGGGTGGACAACCACCTTGTGCATCTTTTGTCACCAAACATATACAGGAATACTTCAGA 681
Query 611 GGCTCTTGAGTCCTTTGATTACATCACCACACATGGGAACTTCAGTTTCACTGAAAGATT 670
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 682 GGCTCTTGAGTCCTTTGAATATATCACCACACATGGGAATTTCAGTTTCACTGAAAGATT 741
Query 671 AGTGGCAAAGTATGCAGGAGCAACGGCAATGTACTTTGTGTCAAAGAAATTGAAGAAAAA 730
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 742 AGTGGCAAAGTATGCAGGAGCAACGGCAATGTACTTTGTATCAAAGAAATTGAAGAAGAA 801
Query 731 ATATAACATTACAGATGAACGTGCGGCTCTTTATGATGCTGCGGAGACATGGGTCGATGC 790
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 802 ATATAACATTACAGATGAACGTGCGGCTCTTTACGATGCTGCAGAGACATGGGTCGATGC 861
Query 791 CTTGAAAGAGCGTCCATACCTCGGTGGGTCAAAACCAAACTTGGCCGATCTTGCTGTATT 850
||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 862 CTTGAAAGAGCGTCCATACCTTGGTGGGTCAAAACCAAACTTGGGCGATCTCGCTGTATT 921
Query 851 CGGTGTTCTGAGGCCAATAAGATACCTTAGATCGGGTAAGGATATGGTGGACAACACACG 910
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 922 CGGTGTTCTGAGGCCAATAAGGTACCTTCGATCGGGTAAGGATATGGTGGACAACACACG 981
Query 911 CATAGGTGAATGGTATTCTCGAATGGAGAACACAGTCGGAGAGCCTTCAAGAATCAAAGA 970
||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 982 CATAGGTGAATGGTATTCTCGAATGGAGAACACGGTCGGAGAACCTTCTAGGATCAAAGA 1041
Query 971 ATAAAGGATCGTTGCTCTTTATCT 994
|||||||||| ||| || | ||||
Sbjct 1042 ATAAAGGATCATTGGTCGT-ATCT 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5