BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949111
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42130.1 | Symbols: | Mitochondrial substrate carrier famil... 1941 0.0
> AT5G42130.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:16835299-16836839 REVERSE LENGTH=1541
Length=1541
Score = 1941 bits (1051), Expect = 0.0
Identities = 1205/1281 (94%), Gaps = 3/1281 (0%)
Strand=Plus/Plus
Query 1 AAGCTT-CACCCAAATCAGCAATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCA 59
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 9 AAGCTTCCACCCAAATCAACCATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCT 68
Query 60 CCGAATCTTAATCACTGCCATTTTCCCAACGATTTCAATTCCCTCTTCACTCATTTCTCC 119
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 69 CCAAATCTTAATCACTGCCATTTTCCCAACGAGTTCAATTCTCTCTTCACTCATTTCTCC 128
Query 120 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACCCAAAACCAAATTCTCT 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 129 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACTCAAAACCAAATCCTCT 188
Query 180 AAAAAATCAACAAAATTTCCAGCAAATTTCAGAAGATCCGACCCACTATTTGCATCAACA 239
||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 189 CAAAAACCCCCAAAATTTTCAGCAAATTTCAGAAGATCCGACCCACCATTTGCATCAACA 248
Query 240 TCAATCTCGGATCCAATCCACGCGAAACCCGGATCCGAATTCCTGAAATGGATCAAACCA 299
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 249 TCAATCTCGGATCCAACCCACGAAAAACCCGGACCCGAATTCCTGAAATGGATCAAACCC 308
Query 300 GCATCGCGAAGCAGTCCAAGAATTCAAACACTCATGAAACAACTCTCTGTCTGGGAACGT 359
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 309 GCATCACGAAGCAGTCCAAGAATTCAAACACTCATCAAACAACTCTCCGTCTGGGAACGT 368
Query 360 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTTACATACGTTGCTCTTCTC 419
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 369 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTCACATACGTTACTCTTCTC 428
Query 420 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATCGCAAC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 429 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATAGTAAC 488
Query 480 ACATTTGATGCTATAGTTAAGACATTTCAAGCTAAAGGTGTTTTAGGTTTCTACAGTGGT 539
||||||||||||||||| || || ||||||||||||||| | ||||||||||| ||||||
Sbjct 489 ACATTTGATGCTATAGTGAAAACCTTTCAAGCTAAAGGTATATTAGGTTTCTATAGTGGT 548
Query 540 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTTGGTACTTGTGAG 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 549 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTCGGTACTTGTGAG 608
Query 600 TTTGGTAAGTCTCTCCTCTCCAAATTCCCGGATTTTCCGACGGTTTTAATCCCGCCTACT 659
|||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 609 TTTGGTAAGTCTCTGCTCTCTAAGTTCCCTGATTTTCCGACGGTTTTAATCCCGCCTACT 668
Query 660 GCTGGTGCTATGGGAAACATAATCTCGTCGGCGATAATGGTTCCTAAAGAGCTTATTACA 719
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 669 GCTGGTGCTATGGGAAACATAATCTCTTCAGCTATAATGGTTCCTAAAGAGCTCATTACA 728
Query 720 CAGAGAATGCAAGCTGGAGCTAGTGGGAGGTCGTATCAAGTTTTGCTTAAGATACTTGAG 779
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 729 CAGAGAATGCAAGCTGGAGCTAGTGGGAGATCTTATCAAGTTTTACTTAAGATACTTGAG 788
Query 780 AAAGATGGAATCTTGGGGCTTTATGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCG 839
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 789 AAAGATGGAATCTTGGGGCTTTACGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCC 848
Query 840 GCTGGTGTACTAAGTTATTCGTCGTTTGAGTATCTGAAAGCAGCGGTTTTGGAGAAAACG 899
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 849 GCTGGTGTACTCAGTTATTCGTCGTTTGAGTATCTGAAAGCCGCGGTTTTGGAGAAAACG 908
Query 900 CAGCAGAGCCATCTGGAGCCTTTGCAGAGTGTTTGTTGTGGTGCGTTGGCTGGTGCGATA 959
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 909 AAGCAGAGCCATCTTGAGCCTTTGCAGAGTGTTTGTTGCGGTGCGTTGGCTGGTGCGATA 968
Query 960 TCTGCTTCGATAACCACACCATTAGATGTGGTGAAGACTAGGCTGATGACACAGATTCAT 1019
|| ||||||||||| || || |||||||| ||||||||||||||||||||||||||||||
Sbjct 969 TCGGCTTCGATAACTACGCCGTTAGATGTTGTGAAGACTAGGCTGATGACACAGATTCAT 1028
Query 1020 GTGGAGGCAGTGAATAAACTTGGTGCTGCTATGTATACTGGTGTTGCTGGAACAGTGA-G 1078
|||||||| ||| ||||||| |||| |||||||||||||||||||||||| ||||||| |
Sbjct 1029 GTGGAGGCTGTGGATAAACTCGGTGGTGCTATGTATACTGGTGTTGCTGGGACAGTGAAG 1088
Query 1079 ACAGATATTGAAAGAGGAAGGTTGGGTTGGTTTTACCCGTGGCATGGGGCCCCGAGTTGT 1138
|||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1089 -CAGATATTGACAGAGGAAGGTTGGGTTGGTTTTACCCGCGGCATGGGACCTCGAGTTGT 1147
Query 1139 TCACAGCGCTTGTTTCTCAGCGATCGGTTATTTTGCGTTTGAGACTGCGAGGCTTACAAT 1198
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1148 TCACAGCGCTTGTTTCTCTGCGATCGGTTATTTTGCCTTTGAGACTGCTAGGCTTACAAT 1207
Query 1199 CTTAAATGAATATTTGAAAAGGAAAGAAGATTCTGAAGCTACCGTTGCTGCTGATTCTTG 1258
||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1208 CTTGAATGAATATTTGAAAAGGAAAGAAGAGTCTGAAGCTAACGTTGCTGCTGATTCTTG 1267
Query 1259 AGTTTGCTTTTTGGTATAGTC 1279
|||| | ||||||||||||||
Sbjct 1268 AGTTCGGTTTTTGGTATAGTC 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5