BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949114

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory fact...   403    7e-112
  AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1...   326    2e-88 


> AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory factor 
1 | chr4:5775210-5777481 FORWARD LENGTH=1458
Length=1458

 Score =  403 bits (218),  Expect = 7e-112
 Identities = 233/240 (97%), Gaps = 2/240 (1%)
 Strand=Plus/Plus

Query  185  ATATTGCTAATTCTGAATTGGCTCCAAAGCATCCGATTCGTCTTGGT-TTAGCGTTGAAC  243
            ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct  671  ATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTCTT-GCGTTGAAC  729

Query  244  TTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAG  303
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  730  TTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAG  789

Query  304  CAGGCGTTTGATGAAGCTATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGAC  363
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  790  CAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGAC  849

Query  364  AGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACCGCTGATATGCAG  423
            |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct  850  AGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG  909


 Score =  117 bits (63),  Expect = 1e-25
 Identities = 73/78 (94%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  421   CAGGACGATCCTACTGATGACATCAAAGAAGCAGCACCAGCAGCACCAAAACCTGCTGAC  480
             |||||||||  | |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  1060  CAGGACGATGTTGCTGATGACATCAAAGAAGCAGCACCAGCAGCAGCAAAACCCGCTGAC  1119

Query  481   GAGCAACAATCCTAAGTC  498
             ||||||||||||||||||
Sbjct  1120  GAGCAACAATCCTAAGTC  1137


> AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1:12867126-12868890 
FORWARD LENGTH=1402
Length=1402

 Score =  326 bits (176),  Expect = 2e-88
 Identities = 218/239 (91%), Gaps = 0/239 (0%)
 Strand=Plus/Plus

Query  185  ATATTGCTAATTCTGAATTGGCTCCAAAGCATCCGATTCGTCTTGGTTTAGCGTTGAACT  244
            ||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |
Sbjct  635  ATATTGCTAATGCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTTTGGCTTTGAATT  694

Query  245  TCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAGC  304
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  695  TCTCTGTGTTTTACTATGAGATTCTTAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGC  754

Query  305  AGGCGTTTGATGAAGCTATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGACA  364
            |||||||||||||||| |||||||| || ||||||||||| || |||||||||||||| |
Sbjct  755  AGGCGTTTGATGAAGCCATTGCTGAGTTAGATACTCTTGGAGAGGAGTCATACAAGGATA  814

Query  365  GTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACCGCTGATATGCAG  423
            |||| ||||| ||||||||||||||||| || || |||||||||||  |||| ||||||
Sbjct  815  GTACCTTGATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGACATGCAG  873



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5