BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949125
Length=2803
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47910.1 | Symbols: RBOHD, ATRBOHD | respiratory burst oxida... 4215 0.0
> AT5G47910.1 | Symbols: RBOHD, ATRBOHD | respiratory burst oxidase
homologue D | chr5:19397443-19402061 FORWARD LENGTH=3201
Length=3201
Score = 4215 bits (2282), Expect = 0.0
Identities = 2642/2816 (94%), Gaps = 23/2816 (1%)
Strand=Plus/Plus
Query 1 TTTTTGGTTTCTTGAATTAGATGAAAATGAGACGAGGCAATTCAAGTACCGACCATGAAC 60
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 123 TTTTTGGTTTCTCGAATTCGATGAAAATGAGACGAGGCAATTCAAGTAACGACCATGAAC 182
Query 61 TTGGGATTCTACGAGGAGCTAACTCGGATACCAACTCTGATACCGAAAGCATCGCTAGCG 120
|||||||||||||||||||||||||||| |||||||| || || || |||||||||||||
Sbjct 183 TTGGGATTCTACGAGGAGCTAACTCGGACACCAACTCGGACACGGAGAGCATCGCTAGCG 242
Query 121 ACCGCGGCG-CTTTCAGTGGTCCGCTTGGTCGGCCTAAACGTGCGTCCAAGAAAAACGCA 179
|||| || | |||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 243 ACCGTGGTGCCTTT-AGCGGTCCGCTTGGCCGGCCTAAACGTGCGTCCAAGAAAAACGCA 301
Query 180 AGATTCGCCGACGATCTTCCCAAGAGAAGCAACAGTGTTGCTGGCGGCCGCGGTGACGAC 239
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 302 AGATTCGCCGACGATCTTCCCAAGAGAAGCAATAGTGTTGCTGGCGGCCGTGGTGATGAC 361
Query 240 GATGAGTACGTGGAGATCACGCTAGACATTAGGGACGACTCGGTGGCCGTCCACAGTGTC 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 362 GATGAGTACGTGGAGATCACGCTAGACATCAGGGACGACTCGGTGGCCGTCCATAGTGTC 421
Query 300 CAACAAGCAGCTGGAGGAGGAGCCCACCTAGAGGACCCCGAGCTAGCCCTTCTCACGAAG 359
||||||||||||||||| |||| |||||| |||||||| |||||||||||||| ||||||
Sbjct 422 CAACAAGCAGCTGGAGGTGGAGGCCACCTGGAGGACCCGGAGCTAGCCCTTCTTACGAAG 481
Query 360 AAGACTCTCGAGAGCAGCCTCAACAACACCACCTCCTTATCCTTCTTCCGAAGCACCTCC 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 482 AAGACTCTCGAGAGCAGCCTCAACAACACCACCTCCTTATCTTTCTTCCGAAGCACCTCC 541
Query 420 TCACGAATCAAGAACGCCTCCCGCGAGCTCCGCCGTGTGTTCTCTAGACGTCCCTCCCCA 479
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 542 TCACGCATCAAGAACGCCTCCCGCGAGCTCCGCCGCGTGTTCTCTAGACGTCCCTCCCCG 601
Query 480 GCCGTGCGGCGGTTTGACCGCACCAGCTCCGCGGCAATCCACGCTCTCAAAGGTCTAAAG 539
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 602 GCCGTGCGGCGGTTTGACCGCACGAGCTCCGCGGCCATCCACGCACTCAAAGGTCTCAAG 661
Query 540 TTCATCGCCACAAAGACAGCCGCGTGGCCAGCCGTCGACCAACGCTTCGATAAACTCTCC 599
||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 662 TTCATTGCCACCAAGACGGCCGCATGGCCGGCCGTCGACCAACGTTTCGATAAACTCTCC 721
Query 600 GCTGATTCCAACGGCCTCTTGCTCTCAT-CCAAGTTTTGGGAATGCTTAGGAATGAACAA 658
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||
Sbjct 722 GCTGATTCCAACGGCCTCTTACTCTC-TGCCAAGTTTTGGGAATGCTTAGGAATGAATAA 780
Query 659 GGAATCTAAAGATTTCGCAGACCAGCTCTTTAGAGCATTAGCTCGCCGGAATAACATCTC 718
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 GGAATCTAAAGACTTCGCTGACCAGCTCTTTAGAGCATTAGCTCGCCGGAATAACGTCTC 840
Query 719 CGGCGATGCAATCACAAAGGAACAGCTCAGGATATTTTGGGAACAGATCTCAGACGAAAG 778
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 841 CGGCGATGCAATCACAAAGGAACAGCTTAGGATATTCTGGGAACAGATCTCAGACGAAAG 900
Query 779 CTTTGATGCAAAACTACAAGTCTTTTTTGATATGGTGGACAAAGATGAAGATGGGCGAGT 838
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 CTTTGATGCCAAACTCCAAGTCTTTTTTGACATGGTGGACAAAGATGAAGATGGGCGAGT 960
Query 839 AACAGAAGAAGAGGTGGCTGAGATTATTAGTCTCAGTGCTTCAGCGAACAAGCTCTCTAA 898
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||
Sbjct 961 AACAGAAGAAGAGGTGGCTGAGATTATTAGTCTTAGTGCTTCTGCAAACAAGCTCTCAAA 1020
Query 899 TATTCAAAAGCAAGCCAAAGAATATGCGGCACTGATAATGGAAGAGTTGGACCCAGACAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TATTCAAAAGCAAGCCAAAGAATATGCGGCACTGATAATGGAAGAGTTGGACCCAGACAA 1080
Query 959 TGCTGGGTTTATTATGATCGAAAACCTGGAGATGTTGCTATTACAAGCACCGAACCAGTC 1018
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 1081 TGCTGGGTTTATTATGATCGAAAACTTGGAAATGTTGCTATTACAAGCACCAAACCAGTC 1140
Query 1019 GGTGCGGATGGGAGACAGCAGGATACTTAGTCAGATGCTAAGTCAGAAGCTGAAACCGGC 1078
||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 1141 GGTGCGGATGGGAGACAGCAGGATACTTAGTCAGATGTTAAGTCAGAAGCTTAGACCGGC 1200
Query 1079 AAAAGAGAGCAACCCTTTAGTGAGGTGGTCGGAGAAAATCAAATATTTCATACTTGACAA 1138
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1201 AAAAGAGAGCAACCCTTTAGTGAGATGGTCGGAGAAAATCAAATATTTCATACTTGACAA 1260
Query 1139 TTGGCAGAGACTATGGATCATGATGCTATGGCTTGGCATATGCGGCGGCCTCTTTACTTA 1198
|||||||||||||||||| |||||| ||||||||||||| || || ||||||||||||||
Sbjct 1261 TTGGCAGAGACTATGGATAATGATGTTATGGCTTGGCATCTGTGGTGGCCTCTTTACTTA 1320
Query 1199 CAAGTTCATTCAGTACAAGAAGAACAAAGCTGCCTATGATGTGATGGGTTATTGTGTTTG 1258
|| ||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct 1321 TAAATTCATTCAGTACAAGAA---CAAAGCTGCCTATGGTGTCATGGGTTATTGCGTTTG 1377
Query 1259 TATCGCCAAGGGAGGCGCGGAGACTCTTAAATTCAACATGGCTCTCATATTGCTGCCTGT 1318
| ||||||| |||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 1378 TGTCGCCAAAGGAGGCGCCGAGACTCTCAAATTCAACATGGCTCTCATATTGTTGCCTGT 1437
Query 1319 TTGTCGTAACACCATCACTTGGCTTAGGAACAAGACTAAGCTAGGTACTGTCGTTCCGTT 1378
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1438 TTGTCGAAACACCATCACTTGGCTTAGGAACAAGACTAAGCTTGGTACTGTCGTTCCTTT 1497
Query 1379 TGACGATAATCTTAACTTTCACAAGGTTATTGCAAGCGGGATTGTGGTCGGGGTTTTGCT 1438
||| |||| ||||||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 1498 TGATGATAGTCTTAACTTCCACAAGGTTATTGCAAGCGGGATAGTCGTCGGTGTTTTACT 1557
Query 1439 CCATGCGGGTGCGCATTTAACTTGTGATTTCCCGCGTATAATTGCCGCGGATGAGGAAAC 1498
|||||||||||| |||||||| |||||||| || ||| ||||||||||||||||||| ||
Sbjct 1558 CCATGCGGGTGCCCATTTAACGTGTGATTTTCCACGTTTAATTGCCGCGGATGAGGACAC 1617
Query 1499 CTATGAGCCAATGGAAAAATACTTTGGGAAGCAACCAGAGAAT-TACTGGTGGTTTGTGA 1557
||||||||| |||||||||||||||||| | ||||| || | ||||||||||||||||
Sbjct 1618 CTATGAGCCGATGGAAAAATACTTTGGGGATCAACC-GACTAGCTACTGGTGGTTTGTGA 1676
Query 1558 AGGGTGTGGAAGGATGGACTGGCATTGTGATGGTTGTGCTAATGGCTATAGCCTTTACAC 1617
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AAGGAGTGGAAGGATGGACTGGCATTGTGATGGTTGTGCTAATGGCTATAGCCTTTACAC 1736
Query 1618 TCGCTACGCCTTGGTTCCGTCGTAACAAGCTTAACTTACCTAAATTCCTCAAGAAGCTTA 1677
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1737 TCGCGACGCCTTGGTTCCGACGTAACAAGCTTAACTTACCTAACTTCCTCAAGAAGCTTA 1796
Query 1678 CTGGTTTTAATGCCTTTTGGTACTCCCACCATTTGTTCATCATTGTTTATGCTCTTCTCA 1737
| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1797 CCGGTTTCAACGCCTTTTGGTACACCCACCATTTGTTCATCATTGTTTATGCTCTTCTCA 1856
Query 1738 TTGTCCACGGTATCAAGCTCTACCTCACAAAGATTTGGTATCAGAAAACGACATGGATGT 1797
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TTGTCCATGGTATCAAGCTCTACCTCACAAAGATTTGGTATCAGAAAACGACATGGATGT 1916
Query 1798 ATCTTGCTGTACCCATCCTTCTATATGCATCTGAGAGGCTGCTACGTGCTTTCAGATCAA 1857
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1917 ATCTTGCTGTACCCATCCTTCTATATGCATCGGAGAGGCTGCTCCGTGCTTTCAGATCAA 1976
Query 1858 GCATCAAACCGGTTAAGATGCTTAAGGTGGCTGTTTACCCCGGGAATGTATTGTCTCTAC 1917
|||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||
Sbjct 1977 GCATCAAACCGGTTAAGATGATCAAGGTGGCTGTTTACCCCGGGAACGTGTTGTCTCTAC 2036
Query 1918 ACATGACAAAGCCACAAGGATTCAAATACAAAAGTGGACAGTACATGTTCGTGAACTGCC 1977
||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 2037 ACATGACGAAGCCACAAGGATTCAAATACAAAAGTGGACAGTTCATGTTGGTGAACTGCC 2096
Query 1978 GAGCCGTATCTCCTTTCGAATGGCATCCTTTCTCCATCACATCCGCTCCGGGAGACGATT 2037
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 2097 GAGCCGTATCTCCATTCGAATGGCATCCTTTCTCAATCACATCAGCTCCCGGAGACGATT 2156
Query 2038 ACCTGAGTGTACACATCCGCACTCTAGGTGACTGGACACGTAAGCTCAGGACAGTTTTCT 2097
||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2157 ACCTGAGCGTACATATCCGCACTCTCGGTGACTGGACACGTAAGCTCAGGACCGTTTTCT 2216
Query 2098 CCGAGGTTTGCAAACCTCCTACCGCTGGTAAAAGCGGTCTACTCCGAGCAGACGGAGGAG 2157
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2217 CCGAGGTTTGCAAACCTCCTACCGCCGGTAAAAGCGGTCTTCTCCGAGCAGACGGAGGAG 2276
Query 2158 ATGGGAACCTCCCGTTCCCAAAGGTCCTTATCGACGGTCCATACGGTGCTCCCGCACAAG 2217
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2277 ATGGAAACCTCCCGTTCCCGAAGGTCCTTATCGACGGTCCATACGGTGCTCCCGCACAAG 2336
Query 2218 ACTACAAGAAATACGACGTGGTACTCCTCGTAGGTCTCGGCATTGGTGCCACGCCTATGA 2277
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2337 ACTACAAGAAATACGACGTGGTACTCCTCGTAGGTCTCGGCATTGGAGCCACGCCTATGA 2396
Query 2278 TCAGCATCCTTAAGGACATCATCAACAACATGAAA--TC-T--CCT-GACAGCGACATCG 2331
|||| |||||||||||||||||||||||||||||| || | || ||||||||||| |
Sbjct 2397 TCAGTATCCTTAAGGACATCATCAACAACATGAAAGGTCCTGACCGCGACAGCGACATTG 2456
Query 2332 AGAATAACAACAGTAACAACAACAGTAAAGGGTTTAAGACGAGGAAGGCTTACTTCTACT 2391
|||| || |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 2457 AGAACAATAACAGTAACAACAATAGTAAAGGGTTTAAGACAAGGAAAGCTTATTTCTACT 2516
Query 2392 GGGTGACAAGAGAACAAGGATCGTTCGAGTGGTTCAAGGGAATAATGGACGAGGTTTCGG 2451
||||||| || ||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 2517 GGGTGACTAGGGAACAAGGATCATTCGAGTGGTTCAAGGGAATAATGGACGAGATTTCGG 2576
Query 2452 AGTTAGACGAGGAAGGAATTATCGAGCTTCACAATTATTGCACGAGTGTGTACGAGGAAG 2511
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 AGTTAGACGAGGAAGGAATCATCGAGCTTCACAATTATTGCACGAGTGTGTACGAGGAAG 2636
Query 2512 GCGATGCTAGAGTGGCTCTCATTGCCATGCTTCAGTCGTTGCAACATGCTAAGAACGGTG 2571
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2637 GTGATGCAAGAGTGGCTCTCATTGCCATGCTTCAGTCGTTGCAACACGCTAAGAACGGTG 2696
Query 2572 TCGATGTTGTGTCGGGGACACGTGTCAAGTCCCACTTCGCTAAACCTAACTGGAGACAAG 2631
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 TGGATGTTGTGTCGGGTACACGTGTCAAGTCCCACTTCGCTAAACCTAACTGGAGACAAG 2756
Query 2632 TCTACAAGAAGATCGCAGTTCAACATCCCGGCAAAAGAATCGGAGTCTTCTACTGTGG-- 2689
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2757 TCTACAAGAAGATCGCTGTTCAACATCCCGGCAAAAGAATAGGAGTCTTCTACTGTGGAA 2816
Query 2690 TGCACCAGGATTGACAAAGGAATTAAAAAATCTAGCTTTGGATTTCTCTCGAAAGACAAC 2749
||| | |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2817 TGC-C-AGGAATGATAAAGGAATTAAAAAATCTAGCTTTGGATTTTTCTCGAAAGACAAC 2874
Query 2750 TACCAAGTTTGACTTCCACAAAGAGAACTTCTAGATTA-T-ATA-A-GTCGTAGAA 2801
|||||||||||||||||||||||||||||||||||||| | ||| | || ||||||
Sbjct 2875 TACCAAGTTTGACTTCCACAAAGAGAACTTCTAGATTAATTATATACGTTGTAGAA 2930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139263433768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5