BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949127

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47930.1 | Symbols:  | Zinc-binding ribosomal protein family...   440    3e-123


> AT5G47930.1 | Symbols:  | Zinc-binding ribosomal protein family 
protein | chr5:19406163-19407400 REVERSE LENGTH=586
Length=586

 Score =  440 bits (238),  Expect = 3e-123
 Identities = 275/293 (94%), Gaps = 2/293 (1%)
 Strand=Plus/Plus

Query  4    CCTTTCCGCAAGCAATCATGGTGCTCCAAAATGACATCGATCTCC-TCAATCCTCCTGCT  62
            ||||||| ||||||||||||||||||||||| ||||||||||||| || |||| ||  ||
Sbjct  55   CCTTTCCACAAGCAATCATGGTGCTCCAAAACGACATCGATCTCCTTC-ATCCGCCACCT  113

Query  63   GAGCTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCTTTCTTC  122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  114  GAGCTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTC  173

Query  123  ATGGATGTTAAGTGTCAGGGATGTTTTAACATAACCACTGTGTTCAGCCATTCGCAAACA  182
            ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| 
Sbjct  174  ATGGATGTTAAGTGTCAGGGATGCTTCAACATAACCACTGTGTTCAGCCATTCTCAAACT  233

Query  183  GTTGTAGTGTGTGGAAACTGTCAGACAGTTCTGTGCCAGCCCACCGGTGGTAAAGCCAGG  242
            ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  234  GTTGTGGTATGTGGAAACTGTCAGACAGTTCTGTGCCAGCCCACCGGTGGTAAAGCGAGG  293

Query  243  CTCCAAGAAGGATGCTCTTTCAGGAAGAAGTGAGATTGAGTTCTCACGAATCA  295
            || ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  294  CTACAAGAGGGATGCTCTTTCAGGAAGAAGTGAGATTGAGATCTCACGAATCA  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5