BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949135
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 627 4e-179
AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 340 6e-93
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 254 8e-67
AT1G61970.1 | Symbols: | Mitochondrial transcription terminati... 250 1e-65
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 627 bits (339), Expect = 4e-179
Identities = 376/394 (95%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 1 TGTGGTCTGTGCGAAGATGAGGTCA-TGTCAGTGTTCAAGAAGAATCTACTATGCTTACG 59
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1103 TGTGGTCTGTGCGAAGATGAGGT-ATTGTCAGTGTTCAAGAAGAATCCACTATGCTTACG 1161
Query 60 TGCTTCAGAGCAGCAGATATTGAATTCCATGGAAACATTTATAGGTTTAGGATTTAGTAG 119
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 1162 TGCTTCAGAGCAGCAGATATTGAACTCCATGGAAACATTTATAGGCTTAGGATTCAGCAG 1221
Query 120 AGATGAGTTTGTGATGATGGTCAAGTGCTTTCCTCAGTGCATTGGATATTCTGCAGAGAT 179
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1222 AGATGAGTTTGTCATGATGGTCAAGTGCCTTCCTCAGTGCATTGGATATTCTGCAGAGAT 1281
Query 180 GGTGAAGAAGAAGACTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTAAAGGTCATGAC 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1282 GGTGAAGAAGAAGACTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTTAAGGTCATTAC 1341
Query 240 TTTGTTCCCTCAGGTACTTGGATACAGCATGGAGAAGAGGATTGTCCCAAGGTGTAACGT 299
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 1342 TTTGTTCCCTCAGGTACTTGGATATAGCATGGAGAAGAGGACTGTCCCAAGGTGTAATGT 1401
Query 300 AATCAAAGCTCTCATGTCCAAAGGATCGCTTGGAAGCGAACTCCCTCCAATGGCGTCTGT 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1402 AATCAAAGCTCTCATGTCCAAAGGATTGCTTGGAAGCGAACTCCCTCCAATGGCGTCTGT 1461
Query 360 CTTGGCATGTACCGATCTGACCTTCTTAAACAGG 393
|||||||||||||||| |||||||||||| |||
Sbjct 1462 TTTGGCATGTACCGATCAGACCTTCTTAAAAAGG 1495
> AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=1386
Length=1386
Score = 340 bits (184), Expect = 6e-93
Identities = 308/367 (84%), Gaps = 12/367 (3%)
Strand=Plus/Plus
Query 12 CGAAGATGAGGTCATGTCAGTGTTCAAGAAGAATCTACTATGC-TTACGTGCTTCAGAGC 70
|||||| || ||| | |||||||| |||||| || || |||| ||| |||||||||||
Sbjct 930 CGAAGACGATGTCCTCTCAGTGTTGAAGAAGTTTCCACAATGCATTA-ATGCTTCAGAGC 988
Query 71 AGCAGATATTGAATTCCATGGAAACATTTATAGGTTTAGGATTTAGTAGAGATGAGTTTG 130
|| ||||| |||| ||||| ||||||||| |||| ||||||||||| ||||||||| |||
Sbjct 989 AGAAGATAATGAACTCCATTGAAACATTTCTAGGCTTAGGATTTAGCAGAGATGAGGTTG 1048
Query 131 TGATGATGGTCAAGTGCTTTCCTCAGTGCATTGGA-TAT-TCTGCAGAGATGGTGAAGAA 188
||||| | |||| |||||||||| ||| || | | | |||||||||| ||||||||
Sbjct 1049 CAATGATAGCCAAGCGCTTTCCTCAATGCCTT--ATTTTATCTGCAGAGACAGTGAAGAA 1106
Query 189 GAAGACTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTAAAGG-TCATGACTTTGTTCC 247
|||||||||||| |||||||||||||||||||||||||||||| | || ||| ||
Sbjct 1107 AAAGACTGAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAAGGCTG-TGG-TTTCAACC 1164
Query 248 C-T-CAGGTACTTGGATACAGCATGGAGAAGAGGATTGTCCCAAGGTGTAACGTAATCAA 305
| | | |||||||||||||||| | |||||||||| | ||||||||||||| ||||| ||
Sbjct 1165 CCTGC-GGTACTTGGATACAGCTTAGAGAAGAGGACTATCCCAAGGTGTAATGTAATTAA 1223
Query 306 AGCTCTCATGTCCAAAGGATCGCTTGGAAGCGAACTCCCTCCAATGGCGTCTGTCTTGGC 365
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||
Sbjct 1224 AGCTCTCATGTCCAAAGGATCGCTTGGAAGTGAACTCCCTGGAATGTCGTCTGTTTTGGT 1283
Query 366 ATGTACC 372
|||||||
Sbjct 1284 ATGTACC 1290
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 254 bits (137), Expect = 8e-67
Identities = 305/382 (80%), Gaps = 27/382 (7%)
Strand=Plus/Plus
Query 12 CGAAGATGAGGTCATGTCAGTGTTCAAGAAGAATCTACTA-TGC-TTACGTGCTTCAGAG 69
|||||| |||||||| |||||||| || ||| ||| | | ||| || || ||||||||
Sbjct 1150 CGAAGACGAGGTCATCTCAGTGTTGAAAAAGTATCCGC-AGTGCATT-GGTACTTCAGAG 1207
Query 70 CAGCAGATATTGAATTCCATGGAAACATTTATAGGTTTAGGATTTAGTAGAGATGAGTTT 129
||| |||||||||| ||||| |||| |||| |||| |||| || || |||||||||||
Sbjct 1208 CAGAAGATATTGAACTCCATTGAAATATTTCTAGGCCTAGGCTTCAGCAGAGATGAGTTC 1267
Query 130 GTGATGATGGTCAAGTGCTTTCCTCAGTG-CATTGGA-TAT-TCTGCAGAGATGGTGAAG 186
| | ||||| ||| ||||||||||||| | || | | | |||||||||| |||||||
Sbjct 1268 ATAACAATGGTTAAGCGCTTTCCTCAGTGTC-TT--ATTTTATCTGCAGAGACGGTGAAG 1324
Query 187 AAGAAGACTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTAAAGG-TCATGACTTTGT- 244
||||||| ||||||||||||||||||||||||||||||||| |||| | || |||
Sbjct 1325 AAGAAGATTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTGAAGGATG-TGG-TTTCAA 1382
Query 245 -TCCCT-CAGGTACTTGGATACAGCATGGAGAAGAGGATTGTCCCAAGGTGTAACGTAAT 302
||| | | |||||||||||||| | |||||||||||| ||||||||||||||| || ||
Sbjct 1383 ATCC-TAC-GGTACTTGGATACAACCTGGAGAAGAGGACTGTCCCAAGGTGTAATGTTAT 1440
Query 303 CAAAGCTCTCATGTCCAAAGGA-T-C--G----CTT-GGAAGCGAACTCCCTCCAATGGC 353
||||||||||||| ||| || | | | | ||||| ||||||||||||||| |
Sbjct 1441 TGAAGCTCTCATGTCAAAAAGACTTCTCGGAGACACAGGAAGTGAACTCCCTCCAATGTC 1500
Query 354 GTCTGTCTTGGCATGTACCGAT 375
|||||| |||| |||||| |||
Sbjct 1501 GTCTGTTTTGGTATGTACTGAT 1522
> AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904486-22907630 FORWARD
LENGTH=2848
Length=2848
Score = 250 bits (135), Expect = 1e-65
Identities = 236/284 (83%), Gaps = 10/284 (4%)
Strand=Plus/Plus
Query 67 GAGCAGCAGATATTGAATTCCATGGAAACATTTATAGGTTTAGGATTTAGTAGAGATGAG 126
||| || |||| ||| | ||||| ||||||||| | || ||||||| || |||||||||
Sbjct 1092 GAGAAGAAGATGTTGGACTCCATTGAAACATTTCTTGGCCTAGGATTCAGCAGAGATGAG 1151
Query 127 TTTGTGATGATGGTCAAGTGCTTTCCTCAGTGCATTGGA-TATTCTGCAGAGATGGTGAA 185
|||| | |||||||||| |||||||| |||||||||| || ||| |||||| ||| ||
Sbjct 1152 TTTGCCAAGATGGTCAAGCACTTTCCTCCGTGCATTGGATTA-TCTACAGAGACGGTCAA 1210
Query 186 GAAGAAGACTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTAAAGG-TCATGACTTTGT 244
||||| ||||||||| |||||||||||||||||||||||||||||| | || |||
Sbjct 1211 AAAGAAAACTGAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAAGGCTGTTG--TTTCA 1268
Query 245 T-CCCT-CAGGTACTTGGATACAGCATGGAGAAGAGGATTGTCCCAAGGTGTAACGTAAT 302
|||| | |||| ||||||| ||| |||||||||||||||| |||||| ||||||||||
Sbjct 1269 AACCCTGC-GGTATTTGGATATAGCCTGGAGAAGAGGATTGTTCCAAGGGGTAACGTAAT 1327
Query 303 CAAAGCTCTCATGTCCAAAGGATCGCTTG-GAAGCGAACTCCCT 345
||||||||||||||||||||||| | | | ||| |||||||||
Sbjct 1328 CAAAGCTCTCATGTCCAAAGGATTGAT-GAGAAATGAACTCCCT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5