BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949136
Length=218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 279 5e-75
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 279 bits (151), Expect = 5e-75
Identities = 199/222 (90%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 1 TCACTCGAGAAGGTTGTTGGGATGGGTTTTGATCCCACCACCCCAAAGTTTGTGGAAGCC 60
|||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 875 TCACTCAACAAGGTTGTTGGGATGGGTTTTGATCCCACCACTCCAAAGTTTGTGGAAGCT 934
Query 61 TTATGCATTTTTTATGGATTGAGCGACAAAAGACTAGAAGAAAAATTCAATGTCTATAAA 120
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 935 TTATGCATTGTTTACGGATTGAGCGACAAAAGACTAGAAGAAAACTTCAATGTCTACAAG 994
Query 121 AGGTTCGGCTTAACTATAGATGATGTATCGGAACTTTTCAAGAACTGCCCTACCTTTCTT 180
|| || ||||||||| || | ||||||| ||||||||||||||| |||||| ||||||||
Sbjct 995 AGATTTGGCTTAACTGTAAACGATGTATGGGAACTTTTCAAGAAGTGCCCTGCCTTTCTT 1054
Query 181 GGATACTCAGAGA---G-ATAATTCAGACATTTGAAACCTTA 218
|||||||| |||| | |||||||||||||||||| |||||
Sbjct 1055 GGATACTCTGAGAATAGGATAATTCAGACATTTGAAGCCTTA 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9751943306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5