BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949141 Length=365 Score E Sequences producing significant alignments: (Bits) Value AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | ch... 228 3e-59 AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr... 211 3e-54 AT3G20510.1 | Symbols: | Transmembrane proteins 14C | chr3:716... 115 3e-25 > AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | chr3:19494377-19496095 REVERSE LENGTH=937 Length=937 Score = 228 bits (123), Expect = 3e-59 Identities = 131/135 (97%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 79 GGAATTTCCGGTTGTTGAAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG 138 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GGAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG 241 Query 139 TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCAATCTTGGACTGGCACCATCA 198 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 242 TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCA 301 Query 199 TCGGTCCTCACAACA 213 ||||||||||||||| Sbjct 302 TCGGTCCTCACAACA 316 > AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr2:15142677-15144182 REVERSE LENGTH=960 Length=960 Score = 211 bits (114), Expect = 3e-54 Identities = 146/161 (91%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 79 GGAATTTCCGGTTGTTGAAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG 138 |||||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct 222 GGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTG 281 Query 139 TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCAATCTTGGACTGGCACCATCA 198 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| Sbjct 282 TGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCA 341 Query 199 TCGGTCCTCACAAC--A-CTGTTCATGAAGGTAGAATTTAT 236 |||||||||||||| | |||| ||||| ||| | |||||| Sbjct 342 TCGGTCCTCACAACGTAACTGTACATGAGGGTCGGATTTAT 382 > AT3G20510.1 | Symbols: | Transmembrane proteins 14C | chr3:7160677-7162206 FORWARD LENGTH=782 Length=782 Score = 115 bits (62), Expect = 3e-25 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 280 ACGGGATAGTGAAGCAAAAATCATGCATTTTTCTCGAGCTGGGTTTGGATTATTCTCTCC 339 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || || Sbjct 235 ACGGGATAGTGAAGCAAAAATCATGCATTTTTCTCGTGCTGGGTTTCGATTATTTTCACC 176 Query 340 GGTGATGATGAAAGTTCAA-GAGCGAT 365 |||||||| |||| || || ||||||| Sbjct 175 GGTGATGAAGAAAATTGAAAGAGCGAT 149 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17141302409 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5