BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949141

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | ch...   228    3e-59
  AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr...   211    3e-54
  AT3G20510.1 | Symbols:  | Transmembrane proteins 14C | chr3:716...   115    3e-25


> AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | 
chr3:19494377-19496095 REVERSE LENGTH=937
Length=937

 Score =  228 bits (123),  Expect = 3e-59
 Identities = 131/135 (97%), Gaps = 0/135 (0%)
 Strand=Plus/Plus

Query  79   GGAATTTCCGGTTGTTGAAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG  138
            ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  GGAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG  241

Query  139  TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCAATCTTGGACTGGCACCATCA  198
            |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct  242  TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCA  301

Query  199  TCGGTCCTCACAACA  213
            |||||||||||||||
Sbjct  302  TCGGTCCTCACAACA  316


> AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr2:15142677-15144182 
REVERSE LENGTH=960
Length=960

 Score =  211 bits (114),  Expect = 3e-54
 Identities = 146/161 (91%), Gaps = 3/161 (2%)
 Strand=Plus/Plus

Query  79   GGAATTTCCGGTTGTTGAAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG  138
            |||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||
Sbjct  222  GGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTG  281

Query  139  TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCAATCTTGGACTGGCACCATCA  198
            ||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||
Sbjct  282  TGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCA  341

Query  199  TCGGTCCTCACAAC--A-CTGTTCATGAAGGTAGAATTTAT  236
            ||||||||||||||  | |||| ||||| ||| | ||||||
Sbjct  342  TCGGTCCTCACAACGTAACTGTACATGAGGGTCGGATTTAT  382


> AT3G20510.1 | Symbols:  | Transmembrane proteins 14C | chr3:7160677-7162206 
FORWARD LENGTH=782
Length=782

 Score =  115 bits (62),  Expect = 3e-25
 Identities = 79/87 (91%), Gaps = 1/87 (1%)
 Strand=Plus/Minus

Query  280  ACGGGATAGTGAAGCAAAAATCATGCATTTTTCTCGAGCTGGGTTTGGATTATTCTCTCC  339
            |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || ||
Sbjct  235  ACGGGATAGTGAAGCAAAAATCATGCATTTTTCTCGTGCTGGGTTTCGATTATTTTCACC  176

Query  340  GGTGATGATGAAAGTTCAA-GAGCGAT  365
            |||||||| |||| || || |||||||
Sbjct  175  GGTGATGAAGAAAATTGAAAGAGCGAT  149



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17141302409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5