BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949155
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family prote... 1905 0.0
> AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:19422203-19425811 FORWARD LENGTH=2070
Length=2070
Score = 1905 bits (1031), Expect = 0.0
Identities = 1141/1195 (95%), Gaps = 3/1195 (0%)
Strand=Plus/Plus
Query 7 GGTGATACGAAGCCATGACAGTTTCAGACGCTTATAGTCCTCCTCTGTTCAGTATAGCCC 66
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 667 GGTGATACGAAGCCATGACAGTTTCAGAAGCTTATAGTCCACCTCTGTTCAGTATAGCCC 726
Query 67 CGATGATGGGATGGACAGACAATCACTACAGAACTCTTGCACGGCTTATAACAAAACACG 126
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 727 CGATGATGGGATGGACAGACAATCATTACAGAACTCTAGCGCGTCTTATAACAAAACACG 786
Query 127 CATGGCTCTACACGGAAATGTTAGCAGCTGAAACCATTGTCTATCAAGAAGATAACCTGG 186
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 787 CATGGCTCTACACTGAAATGTTAGCTGCTGAAACCATTGTCTATCAAGAAGATAACCTGG 846
Query 187 ACAGCTTTTTGGCATACTCTCCAGACCAGCATCCCATTGTTCTTCAAATTGGTGGAAGAA 246
||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 847 ACAGCTTTTTGGCATTCTCTCCAGACCAACATCCCATCGTTCTTCAAATTGGTGGAAGAA 906
Query 247 ACTTGGAAAATTTGGCTAAAGCAACCAGGCTTGCTAATGCTTACGGCTATGATGAAATTA 306
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 907 ACTTGGAAAATTTGGCTAAAGCAACCAGACTTGCTAATGCTTACGCCTATGATGAAATTA 966
Query 307 ATTTCAACTGTGGATGTCCGAGCCCAAAAGTAAGTGGACGAGGTTGTTTTGGTGCTCTTC 366
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 967 ATTTTAACTGTGGATGTCCTAGCCCAAAAGTAAGTGGACGAGGTTGTTTTGGTGCTCTTC 1026
Query 367 TTATGCTTGACCCGAAGTTTGTTGGTGAGGCTATGTCTGTCATTGCTGCCAATACCAATG 426
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1027 TTATGCTTGACCCGAAGTTTGTTGGTGAGGCTATGTCTGTCATTGCAGCCAATACCAATG 1086
Query 427 CAGCTGTCACTGTTAAATGTCGAATAGGTGTTGATGATCATGATTCATATAATGAGCTTT 486
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CAGCTGTCACTGTCAAATGTCGAATAGGTGTTGATGATCATGATTCATATAATGAGCTTT 1146
Query 487 GTGATTTCATCCATATCGTTTCTTCATTATCTCCTACTAAGCATTTCATCATACATTCGC 546
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GTGATTTCATTCATATAGTTTCTTCATTATCTCCTACTAAGCATTTCATCATACATTCGC 1206
Query 547 GAAAAGCATTACTGTCTGGACTTAGCCCATCAGATAACCGTCGAATTCCGCCCTTAAAAT 606
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1207 GGAAGGCATTACTGTCTGGACTTAGCCCGTCAGATAACCGTCGAATTCCGCCCTTAAAAT 1266
Query 607 ACGAGTTTTTCTTTGCCCTCTTGCGTGATTTCCCGGACTTGAAGTTCACTATAAATGGAG 666
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1267 ACGAGTTTTTCTTTGCCCTTTTGCGTGATTTCCCGGACTTAAAGTTCACAATAAATGGAG 1326
Query 667 GCATAAACTCTGTGGTTGAGGCAGATGCCGCATTAAGGTCTGGAGCTCATGGCGTGATGC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1327 GCATAAACTCTGTGGTTGAGGCAGATGCCGCATTAAGGTCTGGAGCTCATGGCGTTATGC 1386
Query 727 TTGGGCGTGCTGTATATTACAATCCCTGGCACACTTTGGGCCACGTCGATACTGTAATTT 786
|||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 1387 TTGGGCGTGCTGTATACTACAATCCCTGGCACATTTTGGGACACGTCGATACTGTAGTTT 1446
Query 787 ATGGATCTCCAAGCAGTGGAATTACAAGGCGACAGGTTCTTGAAAAATATCAAGTCTATG 846
| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1447 ACGGATCTCCAAGCAGTGGAATTACAAGGCGACAGGTTCTTGAAAAATATAAACTATATG 1506
Query 847 GGGAGTCGGTTCTCGGGAAATATGGAAAAGGCCGACCAAATCTTCGAGATATAGTGAGGC 906
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GAGAGTCTGTTCTCGGGAAATATGGAAAAGGCCGACCAAATCTTCGAGATATAGTGAGGC 1566
Query 907 CATTGATCAATTTGTTCCACTCGGAGTCTGGAAATGGCCAGTGGAAACGTAGAACCGATG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 CATTGATCAATTTGTTCCACTCGGAGTCTGGAAATGGCCAGTGGAAACGTAGAACCGATG 1626
Query 967 CTGCTCTCTTGCATTGCACCACCTTAAAATCGTTCTTGGACGAAGTGTTACCAGCAATAC 1026
||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 1627 CTGCTCTCTTGCACTGCACCACCTTACAATCATTCTTAGACGAAGTGTTACCAGCAATAC 1686
Query 1027 CCGACTTTGTCCTTGATTCATCTGCTGTCAAAGAGGCGACTGGACGTGAAGATCTATTTG 1086
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 CCGACTATGTCCTCGATTCATCTGCTGTCAAAGAGGCGACTGGACGTGAAGATCTATTTG 1746
Query 1087 CGGATGTACGACGTTTGTTGCCTCCTCCTTATGGAAAAGAATCATCCAAAGCATTGGAAA 1146
| ||||||| ||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct 1747 CAGATGTACAACGTTTGTTGCCTCCTCCTTACGAAAAAGAATCTTTCAAAGCATTGGAAA 1806
Query 1147 GGATGCCAACAAGACCTGTGATTCTTGATGAGGAGGAATGACAAATCTAGTTTTT 1201
|||| ||||| ||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 1807 GGATACCAACGAGACCTGTGATTCTTGATGAGGA--A-TGACAAATCTATTTTTT 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5