BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949161
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48020.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1742 0.0
> AT5G48020.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:19462658-19464957
REVERSE LENGTH=1465
Length=1465
Score = 1742 bits (943), Expect = 0.0
Identities = 1055/1110 (95%), Gaps = 3/1110 (0%)
Strand=Plus/Plus
Query 4 CTTCCTCTCTTTTGTCGGT-AATGGAATTACCCGTCGTAGATCTGTCTCGTTACCTCGAA 62
||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||
Sbjct 147 CTTCCTCTCTTTTGTCGGTAAATGGAGTTACCCGTCGTAGATCTGTCTAGTTACCTCGAC 206
Query 63 TCCTCCGGTGATGAATTAGGATCCGATCTTCTCGAATCGTGCCGAGAAGTGAGTCGGATC 122
| ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 207 TTCTCCGGTGATGAATTAGGATCCGATCTACTCGAATCATGCCGACAAGTGAGTCGGATC 266
Query 123 CTAAAAGAAACCGGAGCTCTTC-TTGTCAAAGATCCTCGATGTAGCGCTCAAGACAACGA 181
||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||||
Sbjct 267 CTAAAAGAAACCGGAGCTC-TCATTGTTAAAGATCCTCGATGTTGCGCTCAAGACAACGA 325
Query 182 TCGATTCATCGATATGATGGAGACTTATTTCGAAAAACCCGATGATTTCAAACGATTGCA 241
||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 326 TCGATTCATTGATATGATGGAAAATTATTTCGAAAAACCTGATGATTTCAAACGATTGCA 385
Query 242 ACAAAGACCTAATCTTCACTATCAGGTTGGTGCGACGCCGGAGGGAGTGGAAGTTCCGAG 301
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 386 ACAAAGACCTAATCTTCACTATCAGGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAG 445
Query 302 AAGTTTGGTTGATGAAGAGATGCAAGAAAAGTTCAAGACAATGCCTGATGAATACAAACC 361
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 446 GAGTTTGGTTGATGAAGAGATGCAAGAAAAGTTCAATACAATGCCTAATGAATACAAACC 505
Query 362 ACATATTCCTAAAGGACCAGATCATAAGTGGAGATATATGTGGAGAGTTGGTCCTCGGCC 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 506 ACATATTCCGAAAGGACCAGATCATAAGTGGAGATATATGTGGAGAGTTGGTCCTAGGCC 565
Query 422 ATCTAACACACGGTTTAAGGAGCTTAATTCTGAGCCTGTTATACCGGAAGGTTTTCCAGA 481
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 566 ATCTAACACACGGTTTAAGGAGCTTAATTCTGAGCCTGTTGTACCGGAAGGTTTTCCGGG 625
Query 482 GTGGAAAGAAGTAATGGACTCATGGGGTTACAAGATGATATCCGCGGTTGAGGTTGTTGC 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GTGGGAAGAAGTAATGGACTCATGGGGTTACAAGATGATATCCGCGGTTGAGGTTGTTGC 685
Query 542 TGAAATGGCAGCAATCGGTTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCA 601
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TGAAATGGCAGCAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCA 745
Query 602 GGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGGAGGGGAC 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 746 GGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGGAAGGGAC 805
Query 662 GATATTTGCAGGATATCACTATGACCTCAATTTTCTAACGATTCATGGAAGAAGTAGATT 721
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 806 GATATTTGCAGGATATCACTATGATCTTAATTTTCTAACGATTCATGGAAGAAGTAGATT 865
Query 722 CCCTGGTCTATATATTTGGTTAAGGAATGGGGAGAAGGTTGCGGTTAAAGTTCCTGTAGG 781
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 866 CCCTGGTCTATATATTTGGTTAAGGAATGGAGAGAAGGTTGCGGTTAAAGTTCCGGTAGG 925
Query 782 CTGTCTCTTGATTCAAACTGGAAAGCAGATAGAATGGTTGACTGCTGGAGAATGCATTGC 841
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 926 CTGTCTCTTGATTCAAGCTGGAAAGCAGATAGAATGGTTAACTGCTGGAGAATGCATTGC 985
Query 842 TGGAATGCATGAAGTGGTTGTCACGAGCAAGACTAAAGATGCAATCAAATTAGCAAAAGA 901
||||||||||||||||||||| ||||||||||| || ||||| |||| ||||||||| ||
Sbjct 986 TGGAATGCATGAAGTGGTTGTTACGAGCAAGACGAAGGATGCCATCACATTAGCAAAGGA 1045
Query 902 ACAAAACCGAAGCCTATGGAGAGTTTCCTCTACTTTGTTTGCCCACATTGCCTCTGATGC 961
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1046 ACAAAACCGAAGCCTATGGAGAGTTTCCTCGACTTTGTTTGCCCACATTGCCTCTGATGC 1105
Query 962 TGAGCTGAAACCTTTGGGACATTTCGCGGAATCATCACTGGCGAGTAACTATCCGGCGAT 1021
|||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||
Sbjct 1106 GGAGCTGAAACCTTTGGGACATTTCGCAGAATCATCTTTGGCAAGTAAATATCCGGCGAT 1165
Query 1022 ACCCGCAGGAGAGTATGTTGAACAAGAGCTCTCTGTCATCAATCTAAAAGGAAAGAAGGG 1081
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 1166 ACCCGCAGGAGAGTATGTTGAACAAGAACTCTCGGTCATCAATCTCAAAGGAAATAAGGG 1225
Query 1082 ATTTTCATAGTTTCAGTGTTCAGCCATGAA 1111
|| |||||||||||||||||||||| ||||
Sbjct 1226 ATCTTCATAGTTTCAGTGTTCAGCCGTGAA 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5