BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949163
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48040.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1853 0.0
> AT5G48040.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr5:19470139-19472445 FORWARD LENGTH=2134
Length=2134
Score = 1853 bits (1003), Expect = 0.0
Identities = 1201/1297 (93%), Gaps = 11/1297 (1%)
Strand=Plus/Plus
Query 6 ATTAGGGTTTCGCTATAATGCGGTGGTTGCTACAGGGAAGAGTTAATTTGTCTACTAGTT 65
||||||||||||||| ||||| |||||||||||| |||| |||| ||||||||||||||
Sbjct 133 ATTAGGGTTTCGCTACAATGCACTGGTTGCTACAGAGAAGGGTTAGTTTGTCTACTAGTT 192
Query 66 TGTGTAAATGCAGAGAAAGGTTTGATTTTTTATATCAGCAGAGATGTGGTTTAGTTAACG 125
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 193 TGTGTAAATGCAGAGAAAGGTTTGATTTTTTTTATCAGCAGAGATGTGGTTTAGTTAATG 252
Query 126 TTAAGTTGAAATGGGTTAAAGATAAAGAACTTGATGCTGTTGTGGTTCGTGAAAAGCATC 185
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 253 TAAAGTTGAAATGGGTTAAAGATAGAGAACTTGATGCTGTTGTGGTTCGTGAAAAGCATC 312
Query 186 TTAAAGCAGTTTGTAATCTCGTTTCAGTTATTTCGGCTTCTCCTGATTTGAAACTACCTA 245
||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 313 TTAGAGCAGTTTGTAATCTCGTTTCTGTTATTTCGGCTTCTCCTGATTTGAGACTACCTA 372
Query 246 TCTTTAAGCTTTTGCCTCACCGTGGTCAGCTCGGTTTGCCTCAAGAGCTTAAGCTTTCGG 305
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 373 TCTTTAAGCTTTTGCCTCACCGTGGTCAGCTTGGTTTGCCTCAAGAGCTTAAGCTTTCAG 432
Query 306 CGTTTATTCGGAGATATCCCAACATTTTTGTGGAGCATTGTTATTGGGATAATGCAGGTA 365
| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 433 CTTTTATTCGGAGGTATCCCAACATTTTTGTTGAGCATTGTTATTGGGATAGTGCAGGTA 492
Query 366 CTAGTGTTCCTTGCTTTGGTTTAACGT-GTGAGGCGATTGATCTTTATTGTGAAGAAGCT 424
||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||| |
Sbjct 493 CTAGTGTTCCTTGCTTTGGTTTAAC-TCGTGAGACGATTGATCTTTATTATGAAGAAGTT 551
Query 425 GATGTTTTACGGGTCAACGAAAAGGATGTTATTGTGAGGTTGTGTAAACTTCTTATGCTT 484
||||||| |||||| || |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 552 GATGTTTCACGGGTGAATGAAAGGGATGTTCTTGTGAGGTTGTGTAAACTTCTTATGCTT 611
Query 485 ACGTGTGAAAGAACACTTTCGCTACATTCCATTGATCATCTCAGATGGGATTTGGGTTTG 544
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 612 ACTTGTGAAAGAACACTTTCGCTACATTCTATTGATCATCTTAGATGGGACTTGGGTTTG 671
Query 545 CCGTATGATTATAGAGATTCATTGATTCCTAAGCACCCGGATTTGTTCTGTTTGGTGAAG 604
|||||||||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||
Sbjct 672 CCGTATGATTATCGAGATTCGTTGATTACTAAGCATCCGGATTTGTTCAGTTTGGTGAAG 731
Query 605 TTGTCTAGTGATCTTGATGGTTTGAAATTGATATATTGGGATGAACACCTTGCTGTTTCC 664
||||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||||||||
Sbjct 732 TTGTCTAGTGATCTTGACGGTTTAAAATTAATACATTGGGATGAACACCTCGCTGTTTCG 791
Query 665 CAACTGCAGA-TAAAAGAGGACGTTGGAAATAATGATCATATAGCCTTT-CCGGTTAAAT 722
||| |||| | | | |||||||||||||||| |||| | ||| | |||| ||||||||||
Sbjct 792 CAAATGCA-ACTGAGAGAGGACGTTGGAAATGATGAACGTAT-GGCTTTCCCGGTTAAAT 849
Query 723 TTACGAGGGGGTTTGGACTGAAGAGGAAGAGCATGGAGTGGCTCCAAGAATGGCAGAGAC 782
||||||| ||||||||| ||||||||||||| || |||||||||||||||||||| ||||
Sbjct 850 TTACGAGAGGGTTTGGATTGAAGAGGAAGAGTATTGAGTGGCTCCAAGAATGGCAAAGAC 909
Query 783 TCCCTTATACCTCACCTTATGTCGATGCATCTCATTTGGATCCAAGAACTGATTTGTCAG 842
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 910 TTCCTTATACATCACCTTATGTCGATGCATCTCATTTGGATCCAAGAACTGATTTATCAG 969
Query 843 AGAAGAGAAATGTCGGAGTGTTTCACGAACTTCTTCATCTAACAATTGGGAAAAAGACAG 902
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 970 AGAAGAGAAATGTTGGAGTGTTTCACGAACTTCTTCATCTAACAATTGGAAAAAAGACAG 1029
Query 903 AAAGGAAAAACGTTAGCAATCTTCGTAAACCGTTTGCACTTCCGCAGAAGTTCACCAAAG 962
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 AGAGGAAAAACGTTAGCAATCTTCGTAAACCGTTTGCACTTCCGCAGAAGTTCACCAAAG 1089
Query 963 TATTTGAGCGTCACCCGGGTATTTTCTACATTTCTATGAAATGTGATACGCAGACAGTGA 1022
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1090 TATTTGAGCGTCACCCTGGTATTTTCTACATTTCTATGAAATGTGATACACAGACAGTGA 1149
Query 1023 TCCTTAGAGAAGCATATGATAGGCGACATCTCATTGAAAAGCACCCTCTCGTTGAAATCA 1082
||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||
Sbjct 1150 TCCTTAGAGAAGCATATGATAGGCGGCATCTCATCGAAAAGCACCCTCTTGTTGAAGTCA 1209
Query 1083 GGGAAAAATTCGCAAACATGATGAATGAAGGGTTTCTGGATAGAAGTCGGGGACTATATC 1142
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1210 GGGAAAAGTTCGCAAACATGATGAATGAAGGGTTTCTGGATAGAAGTCGGGGACTGTATC 1269
Query 1143 AGAAATCTGTTGATACTGATTTGGGGAAGAACAATATCAAGACAATTTATCCGGTTTGGT 1202
| ||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1270 AAAAATCTGTTGAGGCTGATTTGGAGAAGAACAATATCAAGACAAGTTATCCGGTTTGGT 1329
Query 1203 CAGA--A-GAAGAAGAGTCAGACAATAATCCGAAATCTCGATACGACTCTGATTGTCATC 1259
|||| | |||||||||| ||||||||| || |||| |||||||||||||||||| |
Sbjct 1330 CAGACGAAGAAGAAGAGTTGGACAATAATTTGATATCTGGATACGACTCTGATTGTCCTG 1389
Query 1260 TAGTTAAAGAAACATAAAACGGATGTTTTAGTAGTGA 1296
| ||| ||||| |||||| ||| ||||||||| ||||
Sbjct 1390 TGGTTGAAGAA-CATAAA-CGGGTGTTTTAGTTGTGA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5