BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949173

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79280.2 | Symbols: NUA | nuclear pore anchor | chr1:2981914...  89.8    3e-17


> AT1G79280.2 | Symbols: NUA | nuclear pore anchor | chr1:29819142-29833016 
REVERSE LENGTH=6589
Length=6589

 Score = 89.8 bits (48),  Expect = 3e-17
 Identities = 50/51 (98%), Gaps = 0/51 (0%)
 Strand=Plus/Minus

Query  492   CCTCTTTCTTCTTGGATAAATTCGGCTTTCTCTTCTAATTCGGATAACACC  542
             ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1586  CCTCTTTCTTCTTGGATAAATCCGGCTTTCTCTTCTAATTCGGATAACACC  1536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5