BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949199
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48100.1 | Symbols: TT10, LAC15, ATLAC15 | Laccase/Diphenol ... 2543 0.0
> AT5G48100.1 | Symbols: TT10, LAC15, ATLAC15 | Laccase/Diphenol
oxidase family protein | chr5:19489327-19492744 REVERSE LENGTH=2063
Length=2063
Score = 2543 bits (1377), Expect = 0.0
Identities = 1627/1747 (93%), Gaps = 19/1747 (1%)
Strand=Plus/Plus
Query 1 ATTTACT-AAACCCTCCCAAAATGTCACATTCCTTCTTCCATTTCTTCCTAATCTCTCTT 59
||||||| |||| || ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 142 ATTTACTAAAACTCTTCCAAAATGTCACATTCCTTCTTCAATTTATTCCTAATCTCTCTT 201
Query 60 TTCCTCTACAAAAATTGCATCGCGCATCGCTACACATTCACGGTTAGGGAAGTTCCATAT 119
||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 202 TTCCTCTACAACAATTGCATTGCGCATCACTATACATTCACGGTTAGGGAAGTTCCATAT 261
Query 120 ACGAAACTGTGTAGCACGAAGACGATTTTAACCGTTAATAGTCAGTTTCCTGGACCTG-T 178
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 262 ACGAAACTGTGTAGCACGAAGGCGATTTTAACCGTTAATAGTCAGTTTCCTGGACC-GAT 320
Query 179 TATAAAGGTTCACAAAGGAGACACTATTTATGTTAACGTTCGTAACCGAGCTAGTGAAAA 238
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 321 TATAAAGGTTCACAAAGGAGACACTATTTATGTTAACGTTCAAAACCGAGCTAGTGAAAA 380
Query 239 CATCACAATGCATTGGCATGGTGTAGAGCAGCCAAGAAACCCGTGGTCAGATGGTCCTGA 298
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 381 CATCACAATGCATTGGCATGGTGTAGAGCAGCCGAGAAATCCGTGGTCAGATGGTCCTGA 440
Query 299 ATACATCACACAATGCCCGATTCGACCCGGGTCAGATTTTATGTACAAAGTCATATTTTC 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 441 ATACATCACACAATGCCCGATTCGACCCGGGTCAGATTTTTTGTACAAAGTCATATTTTC 500
Query 359 TATCGAAGACACGACTGTTTGGTGGCACGCGCATAGCTCTTGGACACGTGCAACTGTACA 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CATCGAAGACACGACTGTTTGGTGGCACGCGCATAGCTCTTGGACACGTGCAACTGTACA 560
Query 419 CGGTCTTATTTTCGTATATCCTCGCCCCCCGGAA-TCCCTCCCGTTCCCAAAGGCGGACC 477
||||||||||||||||||||||||||||||| || ||| |||| || |||||||| ||||
Sbjct 561 CGGTCTTATTTTCGTATATCCTCGCCCCCCGCAAATCC-TCCCTTTTCCAAAGGCAGACC 619
Query 478 ATGAAGTCCCTTTAGTTTTGGGGGAGTGGTGGAAAAGGGATGTGAGAGAGGTGGTGGAGG 537
|||||||||| || ||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 620 ATGAAGTCCCCATAATTTTGGGTGAGTGGTGGAAGAGGGATGTGAGAGAGGTCGTTGAGG 679
Query 538 AGTTTATAAGGACAGGAGGGGCTCCTAATGTGTCCGATGCTTTGACAATCAATGGACATC 597
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 680 AGTTCGTAAGGACAGGAGGGGCTCCTAATGTGTCCGATGCTTTGACCATCAATGGACATC 739
Query 598 CTGGTTTCTTGTATCCTTGCTCTAAATCAGATACCTTTCATCTCAAGGTAGAGAAGGGCA 657
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 740 CTGGTTTCTTGTATCCTTGCTCTAAATCAGATACATTTCATCTCACGGTAGAGAAGGGGA 799
Query 658 AAACCTACCGCATTCGGATGGTAAATGCCGCGATGAACCTAATTCTATTTTTCGCAATCG 717
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 800 AAACCTACCGCATTCGGATGGTAAATGCCGCAATGAACCTACCTCTCTTTTTCGCAATCG 859
Query 718 CGAACCACAGCCTCACCGTGGT-TGCGGCAGATGGACACTACATCAAACCTTTAAAGGCT 776
||||||||||||||||||| || | |||| ||||||||||||||||||||| ||||||||
Sbjct 860 CGAACCACAGCCTCACCGTAGTCT-CGGCCGATGGACACTACATCAAACCTATAAAGGCT 918
Query 777 ACTTATATAACCATATCCCCTGGCGAAACGCTAGACATGTTATTACAAGCTGACCAAAAC 836
|||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 919 ACTTATATCACTATATCCCCTGGCGAAACACTAGACATGTTATTACACGCTGACCAAGAC 978
Query 837 CCAAAACGCATTTATTACATGGCGGCCAGAGCTTACCAAACCGGAAATATCGCTTTCGAC 896
|| |||||| |||||||||||| |||||||||||||||| ||||||||||| |||| ||
Sbjct 979 CCCGAACGCACTTATTACATGGCTGCCAGAGCTTACCAAAGCGGAAATATCGATTTCAAC 1038
Query 897 AACTCCACTACCATAGGAATCTTAAGTTACTTCTCTTCACACAAAGCGAAAACACCATCG 956
|||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||
Sbjct 1039 AACTCCACTACCATAGGAATCTTAAGTTACACCTCTTCATGCAAAGCTAAAACATCATCG 1098
Query 957 TTTTCAGGATATTACCCAACCCTTCCTTTTTACAATGACACCTCAGCAGCTTTCGGGTTC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1099 TTTTCAGGATATTACCCAACCCTTCCTTTTTACAATGACACCTCAGCAGCTTTTGGATTC 1158
Query 1017 TTTACCAAGATCAAAAGCCTATACTCCGGTCAAGTTCCTGTTCAAATCTCGCGTAGGATA 1076
||||||||||||||| || ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 1159 TTTACCAAGATCAAATGCTTATTCTCCGGTCAAGTTCCTGTCCAAATCTCTCGTAGGATA 1218
Query 1077 ATCACAACGATTTCAATAAATCTCCGCATGTGTCCTCAAAACTCTTGCGAAGGTCCAAAC 1136
||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1219 ATCACGACGGTTTCAATAAATCTTCGCATGTGTCCTCAAAACTCGTGCGAAGGTCCAAAT 1278
Query 1137 GGGTCGAGATTAGCAGCGAGTATGAACAACATATCGTTTGTCACACCAAGTCACATGGAC 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1279 GGGTCGAGATTAGCAGCGAGTATGAACAACATATCGTTTGTCACACCAAGTCACGTGGAC 1338
Query 1197 ATACTAAAAGCTTATTACTATCACATTAAAGGCGTTTATGGAACGCGGTTTCCAGAGTTT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1339 ATACTAAAAGCTTATTACTATCACATTAAAGGCGTTTATGGAACGCGGTTTCCGGAGTTT 1398
Query 1257 CCACCGTTG-TTTTTCAATTTCACGGCAGAAAATCAACCATTGTTTTTGGAAACTCCGAG 1315
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1399 CCACCGTTGATTTTT-AATTTCACCGCAGAAAATCAGCCATTGTTTTTGGAAACTCCGAG 1457
Query 1316 ACTCGCGACTGAGGTAAAGGTGATTGAGTTCGGGCAAGTGGTTGAGCTTGTTATTCAAGG 1375
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1458 ACTCGCAACCGAGGTAAAGGTGATTGAGTTCGGTCAAGTGGTTGAGCTTGTTATTCAAGG 1517
Query 1376 GACGAGTTTGGTTAATGC---ACTCGATCATCCTATGCATCTCCACGGTTTTAGCTTCTT 1432
||| ||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 1518 GACTAGTTTGGTTGGTGGTGGACTCGATCATCCTATGCATCTCCATGGTTTTAGCTTCTA 1577
Query 1433 TGTGGTTGGAGTAGGGTTTGGGAACTTTAACATAAGTGAAGGAGAACCATCTTC-ATTGT 1491
|||||||||||||||||| ||||||| |||||||||||||| ||| || || || | |
Sbjct 1578 TGTGGTTGGAGTAGGGTTCGGGAACTATAACATAAGTGAAGAAGATCCGTCGTCGAGA-T 1636
Query 1492 ATAATCTCGTG-GATCCACCGTACAAAAATACAATGACCGTGCCCATTAATGGTTGGATC 1550
|||||||| | ||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 1637 ATAATCTC-TACGATCCACCGTATAAAAATACAATGACCGTGCCTAGGAATGGTTGGATC 1695
Query 1551 GCTATCAGATTTCA-AGCTAATAATCCCGGGGTTTGGTTCATGCACTGTCACTTGGATAG 1609
||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 GCTATCAGATT-CGTAGCTGATAATCCCGGGGTTTGGTTCATGCACTGTCACTTGGATAG 1754
Query 1610 ACATCAAACGTGGGGTATGAATGTTGTGTTCATTGTTAAGAATGGGAGAGAGCCAAATCA 1669
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1755 ACATCAAACGTGGGGTATGAATGTTGTGTTCATTGTTAAGAATGGTAGAGAGCCAAATCA 1814
Query 1670 GCAGATTCTGCCTCCACCAGATGATTTGCCGCCTTGTTATGAATAATTGAATGTTACCAG 1729
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1815 GCAGATTCTGCCTCCACCAGATGATTTGCCGCCTTGCTATGAATAATTAAATGTTACCAA 1874
Query 1730 -TGCTTT 1735
||||||
Sbjct 1875 ATGCTTT 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85792731405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5