BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949200

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35630.1 | Symbols: MOR1, GEM1 | ARM repeat superfamily prot...   254    2e-66


> AT2G35630.1 | Symbols: MOR1, GEM1 | ARM repeat superfamily protein 
| chr2:14966678-14980606 FORWARD LENGTH=6332
Length=6332

 Score =  254 bits (137),  Expect = 2e-66
 Identities = 261/318 (82%), Gaps = 20/318 (6%)
 Strand=Plus/Plus

Query  654   GTCATTGGAATCATTACTCACATATCTTGGACTGCGGCTAAGTTTCCTATGAAATGTGAT  713
             ||||||| |||||| ||| | ||||||| |||||| || |||||||||| |||||||| |
Sbjct  2140  GTCATTGAAATCATCACTTATATATCTTCGACTGCAGCGAAGTTTCCTAAGAAATGTG-T  2198

Query  714   -GTACTTTCCATTACAGGCACTAATGAACAAGTTGTAGATATAAAGACACGATCCTCTGC  772
              |||||||  ||||| ||||||| ||||| ||||| ||||||||| ||| || |||||||
Sbjct  2199  CGTACTTTGTATTACCGGCACTAGTGAACGAGTTGCAGATATAAAAACAAGAGCCTCTGC  2258

Query  773   TATGAAGTGGCC-TACTGCATTCTACGAATCATTTGGTCCTAAATTTGATATCAAGAAGT  831
             |||||||| ||| |||||| ||||  ||| || ||||||||  ||||| | |       |
Sbjct  2259  TATGAAGT-GCCTTACTGCTTTCTGTGAAGCAGTTGGTCCTGGATTTG-T-T-------T  2308

Query  832   TCCGTGTTGGTTCGCTTTTAAAAAACATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTG  891
             | || |   |   |||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct  2309  T-CGAG--AG---GCTTTTCAAAATCATGAAAGAGCACAAGAATCCCAAGGTTCTTAGTG  2362

Query  892   AAGGCTTGTTATGGATGGTTTCAGCAGTTGATGACTGTGGTGCCTCACTTTTGAATTTTA  951
             |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||  |||
Sbjct  2363  AAGGCTTGTTATGGATGGTTTCGGCAGTTGATGACTTTGGTGTCTCACTTTTGAAACTTA  2422

Query  952   AAGTTTTGA-AGTTTTTT  968
             | | ||||| || |||||
Sbjct  2423  AGGATTTGATAGATTTTT  2440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 70230562455


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5