BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949205

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G06477.1 | Symbols:  | transposable element gene | chr4:3060...   117    8e-26


> AT4G06477.1 | Symbols:  | transposable element gene | chr4:3060975-3065294 
REVERSE LENGTH=4320
Length=4320

 Score =  117 bits (63),  Expect = 8e-26
 Identities = 65/66 (98%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  328   GGATGGGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTG  387
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4149  GGATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTG  4090

Query  388   CTTGGG  393
             ||||||
Sbjct  4089  CTTGGG  4084



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5