BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949224

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48210.1 | Symbols:  | Protein of unknown function (DUF1278)...   527    3e-149


> AT5G48210.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr5:19548414-19549141 FORWARD LENGTH=728
Length=728

 Score =  527 bits (285),  Expect = 3e-149
 Identities = 347/377 (92%), Gaps = 3/377 (1%)
 Strand=Plus/Plus

Query  49   ATAT-AAAATATAAACTCAATAAATCATTCCAATTCTCTAATCAAAATGTGGACCAACAA  107
            |||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATATCAAGATA-AAACTCAATAAATCATTCCAATTCTCTAATCAAAATGTGGAGCAACAA  59

Query  108  GTTCTTCTTCCTTCTTCCAGTTGTATGCATCGCCGTATTCGCTACAGCTCAGCCGTTGCC  167
            ||||||||||||||||||||||||||||||||  || ||||||||  |||| || |||||
Sbjct  60   GTTCTTCTTCCTTCTTCCAGTTGTATGCATCGTAGTGTTCGCTACTTCTCAACCATTGCC  119

Query  168  ATCACCGCAACCTTCCCAAATAGATTGTTGGTCATCAATAGAAGTTATTCCCGACTGTGT  227
            |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  120  ATCACCACAACCTTCCCAACTAGATTGTTGGTCATCACTAGAAGTTATTCCCGACTGTGT  179

Query  228  CCCGGAAATTTTCCGATCTATAACAAATGGACAGTTCGGGGATGTAGGTCCTTCTTGCTG  287
            |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct  180  CCCGGAAATTTTCCGATCGATAACAAATGGACAGTTCGGGAATGTAGGTCCTTCTTGCTG  239

Query  288  CCATGCCTTT-TGGGTCTCGATGCTGATTGCATCCCTCAGATGTTTATCTTCGCTCCACT  346
            |||||| ||| | ||||||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct  240  CCATGCTTTTATAGGTCTCGATACTGAATGCATCCCTCAGATGTTTATCTTCGCTCCCCT  299

Query  347  CATCCCTCCTTCCCGCAGACTCAGGGATCATTGTTCCAAGACAATAATTGTGCCATAATC  406
            |||||| ||||| |||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct  300  CATCCCGCCTTCTCGCAGACTCAGGGATCATTGTTCCCACAAAATAATTGTGCCATAAAC  359

Query  407  CTTTTGAGACTTCGTTA  423
             ||||||||||| ||||
Sbjct  360  ATTTTGAGACTTTGTTA  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107099600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5