BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949231
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48250.1 | Symbols: | B-box type zinc finger protein with C... 1759 0.0
> AT5G48250.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr5:19561319-19563722 REVERSE LENGTH=1704
Length=1704
Score = 1759 bits (952), Expect = 0.0
Identities = 1100/1169 (94%), Gaps = 20/1169 (2%)
Strand=Plus/Plus
Query 14 TTGAAAGATGGGTTATATGTGTGATTTCTGTGATGAACAAAGATCAATGGTGTATTGTCG 73
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 176 TTGAAAGATGGGTTATATGTGTGATTTCTGTGGTGAACAAAGATCAATGGTGTATTGTCG 235
Query 74 GGCTGATGCAGCATGTTTGTGTCTCTCGTGTGACCGTAGTGTTCATTCTGCTAATGCTTT 133
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 236 ATCTGATGCAGCGTGTTTGTGTCTTTCGTGTGACCGTAATGTTCATTCTGCTAATGCTCT 295
Query 134 ATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCATCTGT 193
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 296 ATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCTTCTGT 355
Query 194 TCGGTGTAGCGATGAGAGGGTTTCTCTATGTCAAAACTGTGATTGGTTAGGCCATGACGG 253
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 CCGGTGTAGTGATGAGAGGGTTTCTCTATGTCAAAACTGTGATTGGTCAGGCCATGACGG 415
Query 254 AAAGAATTCTACTACTACTACTTCACATCATAACAGGCAAACCATCAATTGTTATTCTGG 313
||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 416 CAAGAA-T-T-CTACTACTACTTCACATCATAAAAGGCAAACCATCAATTGTTATTCTGG 472
Query 314 TTGTCCCTCGAGTGCCGAATTATCCTCGATATGGTCTTTCTTTATGGATTTGAATATCTC 373
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 473 TTGTCCCTCGAGTGCCGAATTATCCTCGATATGGTCTTTCTGTATGGATTTGAATATCTC 532
Query 374 TTCTTCTGGAGAATCTGCTTGTGAGCAAGGAATGGGTTTGATGACTATAGATGAAGATGG 433
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTCTGCTGAAGAATCCGCTTGTGAGCAAGGAATGGGTTTGATGACTATAGATGAAGATGG 592
Query 434 CACAGGAGAAAAACCAGGTGTCCCAAATGTTAATGTAGATCAGCCTGAAACCAGTTCAGC 493
||||||||||||| | ||||||| ||| |||||||||| ||||||||||||||||| ||
Sbjct 593 CACAGGAGAAAAATCTGGTGTCCAAAAAATTAATGTAGAACAGCCTGAAACCAGTTCGGC 652
Query 494 TGCACAAGGTATGGATCACTCTAGTGTTCCAGAAAATTCATCATTGGCTAAGGAGCTTGG 553
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 653 TGCACAAGGTATGGATCACTCTAGTGTTCCAGAAAATTCATCAATGGCTAAGGAGCTTGG 712
Query 554 AGTATGCGAGGATGACTTTAATGGAAATCTCATTACAGATGAAGTAGACTTGGCTCTTGA 613
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 713 AGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTGGCTCTTGA 772
Query 614 GAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAACACGG 673
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 773 GAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAGCACGG 832
Query 674 AGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCCTGAGGGCTCAAACAAAGGAAACGA 733
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 833 TGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCTCAA------------- 879
Query 734 AATGCAGCAGCCTGCCGTAAACAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAAC 793
|||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 880 --TGCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAAC 937
Query 794 GGAGCCAATAATTTGCTATTCATCAAAGCCTA-CTCATTCGAATATATCCTTCTCTGGCA 852
||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||
Sbjct 938 CGAGCCAATAATTTGCTATTCATCAAAGCC-AGCACATTCGAATATCTCCTTCTCTGGCA 996
Query 853 TCACGGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCATCATCGATGAAGCAGC 912
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 997 TCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGATGAAGCAGC 1056
Query 913 TTTTAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGCTTCCTCAC 972
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TTTCAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGCTTCCTCAC 1116
Query 973 ATGCCACAACACGTAACAATGCTGTTATGCGCTACAAGGAAAAGAAGAAGGCTCGCAAGT 1032
|||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1117 ATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGT 1176
Query 1033 TTGACAAGCGAGTGAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGA 1092
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TTGACAAGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGA 1236
Query 1093 AAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCAATGAGCCCAACAAGAA 1152
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1237 AAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGATGAGCCCAACAAGAA 1296
Query 1153 GCTACTGAGGATAAGACCCCAAAACAATG 1181
|||||||||||||| ||| ||||||||||
Sbjct 1297 GCTACTGAGGATAAAACCTCAAAACAATG 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5