BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949233
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48270.1 | Symbols: | Plant protein of unknown function (DU... 1589 0.0
> AT5G48270.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr5:19564422-19565857 REVERSE LENGTH=1436
Length=1436
Score = 1589 bits (860), Expect = 0.0
Identities = 961/1011 (95%), Gaps = 2/1011 (0%)
Strand=Plus/Plus
Query 1 CATTGAGGTTTGTAATAAAGATGTTATCATTTCGAATCCCGTCTATCGGAGGCCAACCTA 60
||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 126 CATTGAGGTTTGTAATAAAGATGTTGTCATTTCGAATGCCGTCTATCGGAAGCCAACCTA 185
Query 61 CGGCATTTGCTGCAAAAATAACAGACAATCCAAAGACCGTGGCACAACTCAAGTCGGCTG 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 186 CGGCATTTGCTGCAAAAATAACGGACAATCCAAAGACCGTGGCACAACTCAAGTCGGCTG 245
Query 121 CAACACCTTCACCTCATAGTACCGTCACGTGCGGTTACCAAGCTCATGTGGCAGGCTTCT 180
|| | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 246 CATCGCCTTCACCTCATAGTACCGTGACGTGCGGTTACCAAGCTCATGTGGCAGGGTTCT 305
Query 181 TTCGAAACGTCACCGTTTTATGGTCCAAGAATCTCATGAATCATTCCCTCACCGTAATGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TTCGAAACGTCACCGTTTTATGGTCCAAGAATCTCATGAATCATTCCCTCACCGTAATGG 365
Query 241 TCTCGAGTTTAGACAATGACATGAATTATTGTTGTAAGATTGATCTCGTGAAGCCATGGC 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TGTCGAGTTTAGACAATGACATGAATTATTGTTGTAAGATTGATCTCGTGAAGCCATGGC 425
Query 301 AGTTTTGGAGCAAAAGAGGCTCAAAAG-CATTCGACGTAGAGGGAAACTTTGTGGAGGTC 359
||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 426 AGTTTTGGAGCAAAAGAGGGTC-AAAGTCATTCGACGTAGAGGGAAACTTTGTGGAGGTC 484
Query 360 TTTTGGGATCTTCGATCGGCAAAATTGGCTGGAAACGGTAGTCCGGAACCCGTGTCAGAC 419
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 485 TTTTGGGATCTTCGATCAGCAAAATTGGCTGGAAACGGTAGCCCCGAACCCGTGTCAGAC 544
Query 420 TATTACGTGGCAGTAGTTTCTGATGAAGAGGTTGTTTTATTGTTGGGAGATTTAAAGCAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TATTACGTGGCAGTAGTTTCTGATGAAGAGGTTGTTTTATTGTTGGGAGATTTAAAGCAA 604
Query 480 AAGGCTTACAAGAGGACGAAGTCAAGACCGGCATTGGTGGAAGGGTTCATATATTTTAAG 539
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 605 AAGGCTTATAAGCGGACCAAGTCAAGACCGGCATTGGTGGAAGGGTTCATATACTTTAAA 664
Query 540 AAAGAAAGCATTTTTGGGAAGAAAACGTTTTCTACTCGGGCGAGATTTGATGAGCaaaaa 599
||||||||||| |||||||||||||||||||| |||||||| || ||||| || |||| |
Sbjct 665 AAAGAAAGCATATTTGGGAAGAAAACGTTTTCGACTCGGGCAAGGTTTGACGAACAAAGA 724
Query 600 aaaGAACATGAAGTGGTGGTGGAAAGCTCCAATGGAGCGGCGGATCCCGAGATGTGGATA 659
|| |||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct 725 AAGGAACATGAAGTGGTGGTGGAGAGCTCTAATGGAGCAGCGGAGCCAGAGATGTGGATA 784
Query 660 AGCGTGGACGGGATCGTTGTCGTGCACGTGAAGAATCTACAATGGAAATTTAGGGGTAAT 719
||||| || |||||||| || ||| ||||||||||||||||||||||||||||||| ||
Sbjct 785 AGCGTTGATGGGATCGTGGTTGTGAACGTGAAGAATCTACAATGGAAATTTAGGGGAAAC 844
Query 720 CAAATGGTGTTGGTGGATAGAACGCCGGTAATGGTCTACTACGATGTTCATGATTGGTTG 779
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 845 CAAATGGTGATGGTGGATAGAACACCGGTAATGGTCTACTATGATGTTCATGATTGGTTG 904
Query 780 TTTGCAAGTTCAGAGACTGCGGCGACTTCAGGGTTGTTTTTGTTTAAGCCTGTTCCGGTT 839
||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 905 TTTGCAAGTTCGGAGACTGCAGCGAGTTCAGGGTTGTTTTTGTTTAAGCCTGTTCCGGTT 964
Query 840 GGAGCGATGGTAGATGAGAGCTTTAGCGATGCGGAGGAAGGAGATAGCGGAGGAGGGAGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GGAGCGATGGTAGATGAGAGCTTTAGCGATGCGGAGGAAGGAGATAGCGGAGGAGGGAGT 1024
Query 900 AGTCCTTTAAGTCGTTATAATTCAGCATCAAGTGGTTATGGACCGTTGCATGACTTTTGT 959
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1025 AGTCCTTTGAGTCGTTATAATTCAGCATCAAGTGGTTTTGGACCATTGCATGACTTTTGT 1084
Query 960 TTGTTTCTTTATGCTTGGAAACTTGAATGAAGAATATTAATATCATAGTGT 1010
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1085 TTGTTTCTTTATGCTTGGAAACTTGAATGAAGACTATTAATATCATAGTGT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5