BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949236
Length=3327
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3240 0.0
> AT5G48310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G24610.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:19574859-19580362 REVERSE LENGTH=3573
Length=3573
Score = 3240 bits (1754), Expect = 0.0
Identities = 1931/2019 (96%), Gaps = 2/2019 (0%)
Strand=Plus/Plus
Query 1298 GAATGATAATGTTAGATGGTGGCCAATATACCATGGTGAACAAGAATGTGTTGGCAAGAT 1357
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1464 GAATGATAATGTCAGATGGTGGCCTATATACCATGGTGAACAAGAATGTGTTGGCAAGAT 1523
Query 1358 CCAGCTCTTTCTTGGTAGCACGACCACATCAGATGAAGACTATCACATTAAGAGTGCACC 1417
|||||||||| |||||||||| ||||| || |||||||||| |||||| |||| |||||
Sbjct 1524 CCAGCTCTTTATTGGTAGCACAACCACGTCCGATGAAGACTGTCACATAAAGAACGCACC 1583
Query 1418 TGTTGTGGAGACACTTGCATATGATTTGCTACTAGAAGCGGCTACACGTGCCCAAAAATT 1477
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 TGTTGTGGAGACACTAGCATATGATTTGCTACTAGAAGCGGCTACACGTGCCCAAAAATT 1643
Query 1478 TCATCCTCAAAACTTAAGGCTGAATGGATCTTGGAAATGGCTGTTAAGCGAATTCGCAGA 1537
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1644 CCATCCTCAAAACTTAAGGCTGGATGGATCTTGGAAATGGCTGTTAAGCGAATTCGCAGA 1703
Query 1538 TTATTATGGAGTTTCTGATTCATATACCAAGTTGAGATATCTCTCACATGTAATGAATGT 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 TTATTATGGAGTTTCTGATTCATATACCAAGTTGAGATATCTCTCACATGTAATGAATGT 1763
Query 1598 AGCAACTCCAACAAAAACCTGCTTACAACTTGTGCATGAGTTACTAGTCCCCATCCTAA- 1656
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1764 GGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAAT 1823
Query 1657 GCGCTCGAAGTGAAAAGAGTTTAACCAGACAAGAGAAAAGTATCTTAATGGATTGTGAAA 1716
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 G-GCTCGAAGTGAGAAGAGTTTAACCAGACAAGAGAAAAGTATCTTAATGGATTGTGAAA 1882
Query 1717 TAGAGATAGAAAAACTCATGGCAACTGTTTTTGAGAACTACAAGTCCTTAGATGAAAACT 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 TAGAGATAGAAAAACTCATGGCAACTGTTTTTGAGAACTACAAGTCCTTAGATGAAAACT 1942
Query 1777 GCCCTTCAGGATTGGCAGACATATCTTGTCCCGTGCAAGAATCGGCTTCAACAGCACTTT 1836
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 1943 TCCCTTCAGGATTGGCAGACATATCTTGTCCGGTGCAAGTATCGGCAACAACAGCACTTT 2002
Query 1837 CTCCAGCTGTTCAGGTTTTTAGCCTTCTTCATGATATATTGTCTCCAGAAGCACAAGAAA 1896
|| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2003 CTTCAGCTGTTCAGGTTTTTACCCTCCTTCATGATATATTGTCTCCAGAAGCACAAGAAA 2062
Query 1897 TTTTGAAGAATTACCTCCAGACAGCAGCAAAGAAGAGGTGTCGGAAGCACATGGTTGAAA 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2063 CTTTGAAGAATTACCTCCAGACAGCAGCAAAGAAGAGGTGTCGGAAGCACATGGTTGATA 2122
Query 1957 CCGATGAGTATGTTTCCTGCAACTCTGAAGGTTTTCTTTTGGACTCCGTCACAATTTCTA 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 CCGATGAGTATGTTTCCTGCAACTCTGAAGGTTTTCTTTTGGACTCCGTCACAATTTCTA 2182
Query 2017 CAGCCCACCTGAAAATGAAGAATCTTTGTCTAATTATAAGCAATGAGATAGAGGCTGATA 2076
||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2183 CAGCCTACCTGAAAATGAAGAATCTTTTTCTAATCATAAGCAATGAGATAGAGGCTGATA 2242
Query 2077 TAAAGATCACCAATGAGCATGTACTGCCAAGCTCAATCGACCTAGCCAATATAGCTGCTG 2136
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 2243 TAAAGATCACCAATGAGCATGTACTCCCAAGCTCAATCGACCTAGCGAATCTAGCTGCTG 2302
Query 2137 CCGTATACAGCACTCAGCTATGTAACCGGCTCAGGGCATTTCTGTCAGCAGTTCCACCCT 2196
|||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
Sbjct 2303 TCGTATACAGCACTCAGCTGTGTCACCGGCTCAGAGCATTTCTGTCAGCAGTTCCACCAT 2362
Query 2197 CCTGCCCAATGCCTCATGTCAATGAGCTTCTGATAGCAGTTTCTGATTTTGAAAGAAACC 2256
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2363 CCTGCCCACTGCCTCATGTCAATGAGCTTCTCATAGCAGTTTCAGATTTTGAAAGAAACC 2422
Query 2257 TCGATTCATGGGGAATAAGTTCGGTACAGGGTGGTGTAAACTCTAGGGGGTTATTCCACA 2316
|||||||||||||||| || | ||||| ||||||||| ||||||||||||| |||||||
Sbjct 2423 TCGATTCATGGGGAATCAGCCCAGTACATGGTGGTGTAGACTCTAGGGGGTTGTTCCACA 2482
Query 2317 ACTACATAATGGTTTGGATACATGATATGGAACTTAGACTACTTGACCGATGCAGAGCAG 2376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2483 ACTACATAATGGTTTGGATACATGATATGGAACTTAGACTACTTGACCGATGCAGAGCAG 2542
Query 2377 AAAAGGTTCCATGGTCTGGTGTAATAACAAATCACTCAACATCCCCATTTGCTGAAGACA 2436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2543 AAAAGGTTCCATGGTCTGGTGTAATAACAAATCACTCAACATCCCCATTTGCTGAAGACA 2602
Query 2437 TATATGAGAGAATAAAAGATTCTCTTATAGAGTATGAAGTGGTGATTAGCCGATGGCCAC 2496
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2603 TATATGAGAGAATAAAAGATTCTCTTATAGAGTATGAAGTGGTGATTAGTCGATGGCCAC 2662
Query 2497 AATACACATTGATCTTGGAGAATACTGCTGCAATCGTAGAGAGAGCCATTGTTAAATCAT 2556
||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 2663 AATACACATTGATCTTGGAAAATACTGCTTCAATTGTAGAGAGAGCCATTGTTAAATCAC 2722
Query 2557 TGGAGAAGCAATGTAATGACATTCTAATTCCTTTGAAAGATAGCTTTCCAAAGAGGCTAA 2616
|||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2723 TGGAGAAGCAATACAATGACATTCTAATTCCTTTAAAAGATAGCATTCCAAAGAGGCTAA 2782
Query 2617 ATATGCATGTCCAGAAGCTGACAAGACGGCAATCATCGGTTCTCTATTCTGTTCCAAGTC 2676
|||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||
Sbjct 2783 ATATGCATGTCCAGAAGCTGACAAGAAGGCAATCATCGGTTCTCTACTCTCTTCCAACTC 2842
Query 2677 AACTGGGAACTTTCATCAACACAATAAAGAGAATTCTTGATGTTCTACATCCCAGAGTTG 2736
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2843 AACTGGGAACTTTCATCAACACAATAAAGAGAGTTCTTGATGTTCTACATCCCAGAGTTG 2902
Query 2737 AGGATATCTTGAGACAATGGGCTTCGTGTCTTCCTGTTGTGGAAGACAGGAAGTTACTCT 2796
|||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||
Sbjct 2903 AGGATATCTTGAGACAATGGGCGTCGTGTCTTCCTGTTGTAGAAGACAAGAAGTTAATCT 2962
Query 2797 TTGGGGAGCAGATGAATGTAATCACGGTCTTGCTCAGGACAAAATACAGAAACTACATGC 2856
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2963 TTGGGGAGCAGATGAATGTTATCACAGTCTTGCTCAGGACAAAATACAGAAACTACATGC 3022
Query 2857 AGGCCGCAGTTGATAAACTCGTTAGCAATACGCAATCAAACAAAAACACAAGGCTGAAGA 2916
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3023 AGGCCGCGGTTGATAAACTCGTTAGCAATACGCAATCAAACAAAAACACAAGGCTGAAGA 3082
Query 2917 GAATCTTAGAAGAGATAAAAGACAATGAGAGAGAAGTCGAAGTCCGTGAACGTATGAAGA 2976
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3083 GAATCTTAGAAGAGATAAAAGACAATGAGAGAGAAGTGGAAGTCCGTGAACGTATGAAGA 3142
Query 2977 TGTTATGCTTACAAATCACAGACTCAATCTCAAATCTGCATGATGTCTTCACAAGTCAGA 3036
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3143 CGTTATGCTTACAAATCACAGACTCAGTCTCAAATCTGCATGATGTCTTCACAAGTCAGA 3202
Query 3037 TATTTGTGGCTTCGTGCCGCCTATTCTGGGATAGAATGGCACAAGTGGTCTTGAAGTTTC 3096
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 3203 TATTTGTGGCTTCGTGCCGCCTTTTCTGGGATAGAATGGCACAAGTGGTATTGAAGTTTC 3262
Query 3097 TTGAAGGAAGAAAAGAGAATGAAGTAGGCTACAAAGGCTCTTACTATGCTCTTGGGATAG 3156
||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||
Sbjct 3263 TTGAAGGAAGAAAGGAAAACGAAGTAGGGTACAAAGGCTCTTACTATGCTCTTGGGATAA 3322
Query 3157 TTGAGGACACGTTCGCATCAGAAATGCAGAGGCTACAAGGGAACTCACTACAAGAGAAGG 3216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3323 TTGAGGACACGTTCGCATCAGAAATGCAGAGGCTACAAGGGAACTCACTACAAGAGAAGG 3382
Query 3217 ATATGGAAGCTCCTCGTTCGGTGATTGAGGCACGTTCTATTCTCTCTAGAGACAACAATG 3276
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
Sbjct 3383 ATATGGAAGCTCCTCGTTCGGTCATTGAGGCACGTTCCATTCTCTCCAGAGACAACAACG 3442
Query 3277 CCAATCACTCTTCTTACTTCTATGTCTAGCTCAATATTT 3315
|||||||||||||||||||||||||||| |||||||||
Sbjct 3443 CCAATCACTCTTCTTACTTCTATGTCTAATTCAATATTT 3481
Score = 647 bits (350), Expect = 0.0
Identities = 461/511 (90%), Gaps = 21/511 (4%)
Strand=Plus/Plus
Query 348 AGTGTGAAGGACAGTAAAACTGTGGAAGATGCAAAAATTTGGGAAGTGAACTCGGAGGAA 407
|||||||||||||||||||||||||||||| | ||||| | |||| | ||| || |||
Sbjct 742 AGTGTGAAGGACAGTAAAACTGTGGAAGATTCGAAAATCTCGGAAATTTGCTCAGATGAA 801
Query 408 TT---AGATTGCCATAGTATCAGTGGTCAATATGCTTGGCAAAGTCTTTTGGCATATGAT 464
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TTAGAAGAGTGCCATAGTATCAGTGGTCAATATGCTTGGCAAAGTCTTTTGGCATATGAT 861
Query 465 GCTTGTATAAGACTATGTTTGTATGAATGGTCAAAGGGTTCTACTGAGGCATCTGAGTTT 524
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 862 GCTTGTATAAGACTATGTTTGTATGAATGGTCAAAGGGTTCTACTGAGGCGTCTGAGTTT 921
Query 525 CTACGTGATGAGTGTCGTCTTCTTC-----G-A---GG--T-------TTTCTCTTACAA 566
|| ||||||||||||||| |||||| | | || | ||||||||||||
Sbjct 922 CTGCGTGATGAGTGTCGTATTCTTCGAGGTGCATTTGGTTTGCACAAGTTTCTCTTACAA 981
Query 567 CCTCGGGGTGTACAATCGACTGAGGAAAACAAAAATGTGAAAGCGGAGCAAAAGCCATCC 626
||||||||||||| |||| ||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 982 CCTCGGGGTGTACGATCGTCTGAGAAAAACAACAATGTGAAAGCGGAGCCAAAGCCATCC 1041
Query 627 TTAAAGTCTAATAATGTTGTCAGAAAGTTACGGGTGGAAGTAAAGAGACTTCGATTGATA 686
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1042 TTAAAGTCTAAAAACGTTGTCAGAAAGTTAAGGGTGGAAGTAAAGAGACTTCGATTGATA 1101
Query 687 CCACAACGTAAACTTAGAGGTACAGATTCGCTGCGGAGTTTAATGAATATGCAAATTGGA 746
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1102 CCACAGCGAAAACTTAGAGGCACAGATTCGCTGCGGAGTTTAATGAATATGCAAATAGGA 1161
Query 747 ATGGGGGCAGAGTATTGCCGACAAGTTTCATCACTTGTAAAGACTGGGATGAGTTCTATT 806
|||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 1162 ATGGGGGCAGAGTATTGCAGACAAGTTTCATCACTTGTAAAAACTGGGATGACTTCTATT 1221
Query 807 AAACAGGCTACCCTTTCAGCAGTTTCAGAAG 837
|||||||||||||||||||||||||||||||
Sbjct 1222 AAACAGGCTACCCTTTCAGCAGTTTCAGAAG 1252
Score = 405 bits (219), Expect = 1e-111
Identities = 325/372 (87%), Gaps = 24/372 (6%)
Strand=Plus/Plus
Query 2 TTCGAAATTGAACAGAGGAATGTTGAAAGATAAGAATCTGAGAATTGAAGTTCCGTTTAT 61
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTCGAAATTGAATAGAGGAATGTTGAAAGATAAGAATCTGAGAATTGAAGTTCCGTTTAT 350
Query 62 GAATAGAAGAGTCACTGATTGTGAATTAGAGCTTCGCAAATTCGCATTGAAGAATTCAAC 121
|||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 351 GAATCGAAGAGTCACAGATTGTGAATTAGAGCTTCGGAGATTCGCATTGAAGAATTCAAC 410
Query 122 TCCGGTTAGCGAACGGCGGCCGCATACTCTGAGTTCTAAGGGTTCGGTGTATTGGGATTT 181
||| | ||| ||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCCAGCTAGTGAACGACGACCACATACTCTGAGTTCTAAGGGTTCGGTGTATTGGGATTT 470
Query 182 AGAGGATATAAGAACACCAAGTGCTCCACCTATAATGGAAATTGGACAAGAAGAGAACAT 241
|||||||||| |||| ||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 471 AGAGGATATACGAACTCCAAGTGCTCCACCTATAATGGAAAGTGGACAAGAAGATAGCAT 530
Query 242 CAGCGT-G-GA---AA-------TTGAGAAGATTGAGGATGAGATTTGCAGAGAAGCAGG 289
|||| | | || || || |||||||||||||||||||||| ||||||||||
Sbjct 531 CAGCTTAGAGATTGAAAAGGACATTCAGAAGATTGAGGATGAGATTTGTGGAGAAGCAGG 590
Query 290 AGTAGAGAGTAGTAATCAA-A--GCA-GT-A--CA---CA--TTTGTATAGAGTTGAAGA 337
||||||||||||||| ||| | ||| | | || || ||||||||||||||||||
Sbjct 591 AGTAGAGAGTAGTAAGCAAGAAAGCATGAGAAGCAGTTCACATTTGTATAGAGTTGAAGA 650
Query 338 ATTTGGGGAAAG 349
|||||| |||||
Sbjct 651 ATTTGGTGAAAG 662
Score = 340 bits (184), Expect = 4e-92
Identities = 204/214 (95%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 983 AGAACAATTCTCCTGCTACCTTCAAATGAAGAGCACAGCAGAAGGAGGTCAAATTGAACA 1042
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1251 AGAACAATTCTCTTGCTACCTTCAAATGAAGAGCACAGCAGAAGGTGGTCAAATTGAACA 1310
Query 1043 AGGATCTTCTGTTTGTTTGCAATCAGGAACTGGAAGTTACCATGTCTTCTTTCCCGAATC 1102
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1311 AGGATCTTCTGTTTGTTTGCAGTCAGGAACTGGAAGTTACCATGTCTTCTTTCCTGAGTC 1370
Query 1103 CGAAGGTGATGCTCTTTTGATAGAAGTTCAAGATAAGAAGAAATCAGTTCAAGGAAAAGC 1162
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CGAAGGCGACGCTCTTATGATAGAAGTTCAAGATAAGAAGAAATCAGTTCAAGGAAAAGC 1430
Query 1163 AATGATATCTATGACATCATTAACTGAAAATCCG 1196
|||||| ||||| |||||||||||||||||||||
Sbjct 1431 AATGATTTCTATCACATCATTAACTGAAAATCCG 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165550911900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5