BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949242

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47610.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   272    1e-72
  AT3G62870.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   222    1e-57


> AT2G47610.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr2:19529744-19531659 FORWARD LENGTH=1142
Length=1142

 Score =  272 bits (147),  Expect = 1e-72
 Identities = 171/182 (94%), Gaps = 3/182 (2%)
 Strand=Plus/Plus

Query  81   GTTGTTCAGCAAAAGACTGCTGCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAG  140
            |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  660  GTTGTTCACCAGAAGACTGCTTCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAG  719

Query  141  CTAGAGTTCAGCAAAATCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGGAG  200
            |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct  720  CTAGAGTTCAGCAAAATCCTGGAAGCTATCAAGGCCAACTTCAATGACAAGTACGAGGAG  779

Query  201  TACAGGAAGAAATGGGGAGGAGGCATAATGGGATCATATTAGTCTCAAGCGAAGACCAAG  260
            ||||||||||||||||||||||||||||||||||| ||  ||||||| || |||||||||
Sbjct  780  TACAGGAAGAAATGGGGAGGAGGCATAATGGGATC-TA--AGTCTCAGGCAAAGACCAAG  836

Query  261  GC  262
            ||
Sbjct  837  GC  838


> AT3G62870.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr3:23242665-23244353 REVERSE LENGTH=1048
Length=1048

 Score =  222 bits (120),  Expect = 1e-57
 Identities = 159/177 (90%), Gaps = 5/177 (3%)
 Strand=Plus/Plus

Query  84   GTTCAGCAAAAGACTGCTGCTTG-CTTGTGTTTGACCACTGTCAAGAACGAGGACAAGCT  142
            ||||| || ||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct  630  GTTCACCAGAAGACTGCTGC-TGCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCT  688

Query  143  AGAGTTCAGCAAAATCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGGAGTA  202
             ||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||
Sbjct  689  TGAGTTCAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTA  748

Query  203  CAGGAAGAAATGGGGAGGAGGCATAATGGGATCATATTAGTCTCAAGCGAAGACCAA  259
            ||||||||| |||||||| ||||||||||||||  |  |||||||||| ||||||||
Sbjct  749  CAGGAAGAAGTGGGGAGGTGGCATAATGGGATCC-A--AGTCTCAAGCCAAGACCAA  802



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11963724262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5