BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949247
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48375.1 | Symbols: TGG3, BGLU39 | thioglucoside glucosidase... 688 0.0
> AT5G48375.1 | Symbols: TGG3, BGLU39 | thioglucoside glucosidase
3 | chr5:19601303-19603883 REVERSE LENGTH=1320
Length=1320
Score = 688 bits (372), Expect = 0.0
Identities = 489/543 (90%), Gaps = 17/543 (3%)
Strand=Plus/Plus
Query 675 GAACCCTATATCGTTGCGCACAACCAGCTTCTTGCTCATGCCGAAGTCGTCGATCTTTAC 734
||||| ||||||||||| || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 622 GAACCTTATATCGTTGCACATAACCAGCTTCTTGCTCATGCCAAAGTCGTCCATCTTTAC 681
Query 735 AGGAAAAAATATAAGCCAAAACAAGGAGGACAGATTGGAGTTGTGATGATAACTAGATGG 794
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 682 CGGAAAAAATATAAGCCAAAACAAAGAGGACAGATTGGAGTTGTGATGATTACTAGATGG 741
Query 795 TTTATTCCATATGATAGCACTGAAGCCAACAAAAAGGCAACTGAGAGGAACAAAGAGTTC 854
||| ||||||||||||||||| ||||||||| | | || ||||||||||||||||| |||
Sbjct 742 TTTGTTCCATATGATAGCACTCAAGCCAACATAGATGCGACTGAGAGGAACAAAGAATTC 801
Query 855 TTCTTGGGATGGTTTATGGAGCCGCTAACAAAAGGTAAATACCCAGACATCATGAGAAAA 914
|||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 802 TTCTTGGGATGGTTCATGGAGCCACTAACAAAAGGTAAATACCCTGATATCATGAGAAAA 861
Query 915 CTTGTGGGTCGACGGCTTCTAAACTTCAGTGAA-AGAGAAGCCAAACTTGTGAAGGGTTC 973
|||||||||||||| |||| ||| |||| | || | ||||||||||||||| ||||||||
Sbjct 862 CTTGTGGGTCGACGCCTTCCAAAGTTCAAT-AAGAAAGAAGCCAAACTTGTAAAGGGTTC 920
Query 974 ATATGATTTTCTTGGTATCAACTATTACCAAACTCAGTACGTCTATGCCATTCCTGCAAA 1033
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 921 ATATGATTTTCTTGGTATCAACTACTACCAAACTCAGTATGTCTATGCCATTCCCGCAAA 980
Query 1034 TCCTCCGAATAGACTCACCGTCATGAATGACTCACTTTCAGCATACTCATATGAAAATAA 1093
|||||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||
Sbjct 981 TCCTCCGAATAGACTCACCGTCCTGAATGACTCGCTCTCAGCATTCTCATATGAAAATAA 1040
Query 1094 AGATGGTCCCATAGGTCCATGGTT-A-T-----TA-------CCATCCAAGAGGAATGT- 1138
|||||||||||||||||||||||| | | || ||||||||||||||| |
Sbjct 1041 AGATGGTCCCATAGGTCCATGGTTCAATGCAGATAGTTATTACCATCCAAGAGGAATTTT 1100
Query 1139 AAACGTGTTGGAGCACTTCGAAACTAAGTACGGAAACCCTTTAGTCTATATCACCGAGAA 1198
||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1101 AAACGTGTTGGAGCACTTCAAAACTAAATACGGAAACCCATTAGTCTATATCACTGAGAA 1160
Query 1199 CGG 1201
|||
Sbjct 1161 CGG 1163
Score = 508 bits (275), Expect = 5e-143
Identities = 441/517 (85%), Gaps = 28/517 (5%)
Strand=Plus/Plus
Query 21 ATGAAGCTTCTTGGACTCTGCTTAGTTCTTCTATTAGCGGTGGTGACTTGCAAAGCTGAA 80
|||||| ||| || |||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1 ATGAAGTTTCGTGCACTCGGCTTAGTTCTTCTATTAGCAGTGGAGACTTGCAAAGCTGAA 60
Query 81 GAGATTACGTGCGAAGAGACCAAGCCATTCACATGTAACCAAACTGATCGTTTCAACAGA 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGATTACGTGCGAAGAGACCAAGCCATTCACATGTAACCAAACTGATCGTTTCAACAGA 120
Query 141 AAACATTTCGATGATGACTTCATCTTCGGTGTTGCATCCT-CTGCGTACC--AGGCATGT 197
|||||||||||||||||||||||||||| | || | | | | || | | | |
Sbjct 121 AAACATTTCGATGATGACTTCATCTTCGAAGGTGGAAAAGGCCGTGG-CCTTAA-CGTTT 178
Query 198 GCTAAAGGTCGTGGACTTAACGTT-TGGGATGAGAAAGGAGGACCCGATCTAGGGAATGG 256
| | || | | ||| | || | | | |||||||||||||||||| ||||||||||
Sbjct 179 GGGAT-GG-CTTC-ACTCACCGATATCC-A-GAGAAAGGAGGACCCGATTTAGGGAATGG 233
Query 257 AGACAACACTTGTGGATCATATGAGCACTGGCAGAAAGATATAGACGTAATGACCGAACT 316
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AGACAGCACTTGTGGATCATATGAGCACTGGCAGAAAGATATAGACGTAATGACCGAACT 293
Query 317 CGGTGTTGACGGCTATAGATTCTCGCTTGCGTGGTCAAGAATCATTCCGAGAGGAAAGGT 376
||| |||||||||||||||||||||||||| |||||||||||| ||| || |||| |
Sbjct 294 CGGGGTTGACGGCTATAGATTCTCGCTTGCTTGGTCAAGAATCGCTCCAAG-GGAA---T 349
Query 377 GAAGAGGGGAATCAACGAAGCAGGGGTTAAGTACTATAACGAGCTCATAGATGGCCTCCT 436
|| | | | ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 350 CAA-A-------C--C-AAGCAGGTGTTAAGTACTATAACGATCTCATAGATGGCCTCCT 398
Query 437 AG-AGAAGAATATAACTCCTTTCGTTACCCTCTTCCATTGGGACCTTCCTCAAGTTCTAC 495
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 399 AGCA-AAGAATATAACTCCTTTTGTTACCCTCTTCCATTGGGACCTTCCTCAAGTTCTGC 457
Query 496 AAGATGAGTATGAAGGTTTTTTGCACCGCGATATCAT 532
||||||| ||||||||||| ||| ||| || |||||
Sbjct 458 AAGATGAATATGAAGGTTTCTTGAACCATGAGATCAT 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5