BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949254
Length=2626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48410.1 | Symbols: ATGLR1.3, GLR1.3 | glutamate receptor 1.... 3413 0.0
AT5G48400.2 | Symbols: ATGLR1.2, GLR1.2 | Glutamate receptor fa... 2981 0.0
> AT5G48410.1 | Symbols: ATGLR1.3, GLR1.3 | glutamate receptor
1.3 | chr5:19620267-19623425 FORWARD LENGTH=2780
Length=2780
Score = 3413 bits (1848), Expect = 0.0
Identities = 2381/2636 (90%), Gaps = 45/2636 (2%)
Strand=Plus/Plus
Query 2 TAGTTGAAAAGtttttttAATGGAGAGATTTTGT-TTCAAAAATCC-AATTTTGCTATCG 59
|||||| ||||||||||||||||||||||||||| ||| ||| || || ||||||||||
Sbjct 31 TAGTTGGAAAGTTTTTTTAATGGAGAGATTTTGTATTC--AAACCCAAACTTTGCTATCG 88
Query 60 TTTCTTCTTGTTTTGCTTCTCTTCATCTCCA------TTGCTTCTACTCAAAACGACGAC 113
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 89 TTTCTTCTTGTTTTGCTTCTCTTCATCTCCAGGTCTTTTGCTTCTACTAAAAACGACGAC 148
Query 114 GTTGATCATGGACGTAAACGGGTTCAGATCCGGGTCGGGTTGGTATTGGATTTGGGTTCC 173
|||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 149 GTTG---ATGGAGGTAAACGGGTTCAGATCCGGGTCGGGTTGGTTTTGGATTTGGGTTCC 205
Query 174 GTGGAAGGGAAGATAGTGAAAAGCTCTGTTTCAATGGCTCTTTCAGATTTCTACGCTATT 233
|| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 206 TTGAAAGGGAAGATAGTGAAAAACTCTGTTTCCATGGCTCTTTCCTATTTCTACGCTATT 265
Query 234 AACAATGATTACAAAACTAGAGTCTCTTTTTCAGTCAGAAACTCTCATGGAGAGCCTCTT 293
| |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 266 CATAATGATTACAAAACAAGAGTCTCTGTTTCACTCAGAAACTCTCATGGAGAGCCTCTT 325
Query 294 CTTGCTCTTGCTTCTGCTGTAGATCTGT-TGCAAACTGAAGGAGTGGAAGCGATAATTGG 352
|||||||||||||||||||||||||| | || ||||||||||||| |||||||| |||||
Sbjct 326 CTTGCTCTTGCTTCTGCTGTAGATCT-TCTGAAAACTGAAGGAGTAGAAGCGATTATTGG 384
Query 353 CGGGAATTCGTTGTTGGAAGCGAAGCTTTTAGGGGAACTTGGAGAGCAAGCTAGGGTTCC 412
|||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 385 CGGGAACTCGTTGTTAGAAGCGAAGCTTTTAGGGGAACTTGGAGAGAAAGCTAGGGTTCC 444
Query 413 TGTGATTACGCTTAACTCTCCCATGTCATTGTCATTGAGTAAATACAGTTACTTGATCCA 472
| ||||| | ||| ||||||| | ||||||||||| || ||||||| | ||||||||||
Sbjct 445 TATGATTTCACTTGACTCTCCGTTTTCATTGTCATTAAGCAAATACACTCACTTGATCCA 504
Query 473 AGCCACACATGATTCTGTCTCTGAGGCTAAGGGAATTATAGCTTTCATCAATGGGTTTGA 532
|||||||||||||||| ||||||||| ||||| |||| | |||| || |||| ||||||
Sbjct 505 AGCCACACATGATTCTACCTCTGAGGCAAAGGGGATTACATCTTTTATTAATGTGTTTGA 564
Query 533 TTGGAACAGTGTTGCTCTTCTTTATGAAGATCATGATGACTGGAGAGAGAGTATGC-ATT 591
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 565 TTGGAACAGTGTTGCTCTTGTTTATGAAGATCATGATGACTGGAGAGAGAGTATGCAACT 624
Query 592 TTATGGTAGACCATTTCCATGAGAACAACGTTCGTGTACAGTCCAAGGTTGGTTTTACTG 651
|| |||| || ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 625 TT-TGGTGGAGCATTTTCATGAGAACGGTGTTCGTGTACAGTCCAAGGTTGGTTTTACTG 683
Query 652 TCTCTTCAAGTGAGGATTTTGTGATGGATCGTTTACAGAAACTGAAGGACTTAGGAACAA 711
||||||| ||||||||||||||||||| ||| |||||| | ||||||||||| || || |
Sbjct 684 TCTCTTCTAGTGAGGATTTTGTGATGGGTCGGTTACAGCAGCTGAAGGACTTGGGGACTA 743
Query 712 CAGTCTTTGTTGTTCACTTGTCTAG-AGTTATTGCAACTCATCTCTTCCCATGTGCTGGG 770
| ||||||||||||||||||||| | |||||||||||||||| | |||||||||||| ||
Sbjct 744 CTGTCTTTGTTGTTCACTTGTCT-GAAGTTATTGCAACTCATTTATTCCCATGTGCTCGG 802
Query 771 AGATTAGGGTTGATGGGTGAAGGGTTTGTTTGGATCCTCACTACTAAAACAATGAACAGC 830
|||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||
Sbjct 803 AGATTAGGGTTGATGGGTGATGGGTTTGTTTGGATCCTGACTGCTAAAACTATGAACAGC 862
Query 831 TTCAATGAAAACATTGACGATTTCTCAAAAG-AGGCAATGGAAGGTGTGGTTGGTTTCAA 889
||| |||| |||||||| |||||| | |||| ||||||||||||||||||||||||||||
Sbjct 863 TTCCATGAGAACATTGATGATTTCAC-AAAGCAGGCAATGGAAGGTGTGGTTGGTTTCAA 921
Query 890 GTCCTACATTCCAATGTCTAAAGAGCTTCGAAATTTCACTTTAAGATGGAGAAAATCATT 949
||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||
Sbjct 922 GTCTTACATTCCAATGTCTATAGAGCTTCAAAATTTCACTTTGAGATGGAGAAAATCATT 981
Query 950 G-CTGGTTGAAGAAGCGGAGATAACTCAGTTGAGTATCTCTGGCGTATGGGCTCACGATA 1008
| || ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct 982 GCCT-GTTGAAGAAGCGGAGCTAACTCGGTTGAGTATCTCTGGCATATGGGCTCACGATA 1040
Query 1009 TCGCTTGGGCTCTAGCGAGTGCAGCGGAAGTTACAAGGATGCCAAATGT-ATCATCAACT 1067
|||||| ||||| ||||| ||||| ||||||| ||||||||||||||| | ||||||||
Sbjct 1041 TCGCTTTTGCTCTGGCGAGAGCAGCAGAAGTTATAAGGATGCCAAATGTGA-CATCAACT 1099
Query 1068 CTCCTTGAGGCAATCTCAGAGAGTAGATTTAAGGGTTTGAGTGGTGATTTCCAGTTGCAT 1127
|||||||||| |||| || ||| ||| ||||| |||||||||||||||||||| | ||
Sbjct 1100 CTCCTTGAGGAAATCACAAAGACTAGGTTTAACGGTTTGAGTGGTGATTTCCAACTAAAT 1159
Query 1128 GATAAGAAGTTGTTATCAAAAAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAGA 1187
|||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||
Sbjct 1160 GATAAGAAGTTGTTATCAAACAAGTTTGAGATTATCAATATGATAGGATCAAGTGAGAGA 1219
Query 1188 AGGGTAGGATACTGGAATTCTAATGGTAGTTTCAGCAGTAGAAGACATTTATCTTCTACT 1247
|| ||||||| || ||| ||||| |||||||| || | ||||||||||||||||||||||
Sbjct 1220 AGAGTAGGATTCTTGAACTCTAACGGTAGTTTTAGTAATAGAAGACATTTATCTTCTACT 1279
Query 1248 CATGACAAGCTGGAGACCATCATTTGGCCCGGTGGGTCTGCTCAAAGTCCGAAAGGGAGT 1307
||| ||||||| |||||||| || ||||| |||||||||||||||||||||||||||| |
Sbjct 1280 CATAACAAGCTTGAGACCATAATCTGGCCAGGTGGGTCTGCTCAAAGTCCGAAAGGGACT 1339
Query 1308 AGTCTAAGAGAGAGCGGTAGAAAAAAGCTGAGGGTTTTGGTTACATCTAGCAATAGATTT 1367
||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1340 AGTCTAATAGATAGCGATAGAAAAAAGCTGAGGGTCTTGGTTACATCTAGCAATAGATTC 1399
Query 1368 CCAAGACTGATGAAAGTTGAGACTGATCCGGTAACAAATGAAGTAATTGTCGAAGGGTTC 1427
||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 1400 CCAAGACTGATGAAAGTGGAGACTGATCCAGTAACAAATGAATTAATTGTTGAAGGGTTC 1459
Query 1428 TGTATAGAAGCT-TTTCGGGCTTCGATTAGTCCTTTCAACTATGAAGTTGAGTACATACC 1486
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1460 TGTATAGAAG-TCTTTCGCGCTTCGATTAGTCCTTTCAACTATGAAGTTGAGTATATACC 1518
Query 1487 TTGGCTTAATGGAAGTAACTACGACAATCTTGCATATGCACTT-AGTAGCCAGAAAGACA 1545
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1519 TTGGCTCAATGGAAGTAACTACGACAATCTTGCATATGCACTTCA-TAGCCAGAAAGACA 1577
Query 1546 AATACGATGCAGCTGTGGGAGATATTACAATCACTTCCAATAGATCGATGTATGTTGATT 1605
|||| ||||| || ||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct 1578 AATATGATGCGGCCGTGGGAGATATTACAATCACTTCGAATAGATCGACGTATGTTGACT 1637
Query 1606 TTACGTTGCCATTCACCGAAATGGGTCTTGGAATTGTAGCACTAAAGGAGAGAAGTATGT 1665
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1638 TTACGTTGCCATTCACTGAAATGGGTCTTGGAATTGTAGCAGTAAAAGAGAGAAGTATGT 1697
Query 1666 GGGTGTTCTTCCAACCTTTAACACCAGACCTATGGATAACAAGTGCATCTTTCTTTGTTT 1725
|||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||| |
Sbjct 1698 GGGTGTTCTTCCAACCTTTAACACCAGATCTTTGGATAACAAGTGCATTTTTTTTTGTCT 1757
Query 1726 TGACCGGCA-TTATAGTTTGGTTGATAGAAAGATCTGAGAACAAAGAGTTCCAAGGATCT 1784
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1758 TGACCGG-AGTTATAGTTTGGTTGATAGAAAGAGCTGAGAACAAAGAGTTCCAAGGATCT 1816
Query 1785 TGGCCACAACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCTTGTTTATGCTCAC 1844
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1817 TGGCCACAACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCTTGTCTATGCTCAT 1876
Query 1845 AGGGAGAGGCTAAAACACAACTTATCAAGATTTGTAGTTACAGTTTGGGTATTTGCGGTG 1904
||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1877 AGGGAAAAGCTAAAACACAACTTATCAAGATTTGTTGTTACAGTTTGGGTATTTGCAGTG 1936
Query 1905 CTCATATTGACCGCTAGTTACACTGCAACATTGACATCAATGATGACGGTGCAACAGATA 1964
|||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1937 CTCATACTGACTGCAAGTTACACTGCAACATTGACATCAATGATGACGGTACAACAGATA 1996
Query 1965 CGATTCAACTCAAATGAAGACTACGTGGGTCACCTTTCGGGCTCCCTTATCGCAAATGTG 2024
||||| ||||| || ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1997 CGATTTAACTCCAACGAAGACTACGTGGGTCACCTTTCCGGCTCCCTCATTGCAAATGTG 2056
Query 2025 GCTCTCACTAGTTCCAGCCTCCGAGCAATGAGATCACTAGGTCTCAATAGTTCTGCAGAT 2084
|||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||
Sbjct 2057 GCTCTCACTAGTTCCAGCCTCCGAGCAATGAGATCATTGGGTCTTAATAGTGCTGCAGAT 2116
Query 2085 TATGCTCACGCCTTGCTGAACAAGACTGTCTCTTTTGTTGTTGATGAGTTACCATACCTC 2144
|||||||| |||||| ||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 2117 TATGCTCAAGCCTTGTTGAACAAGACTGTTTCATTTGTTGTTGATGAGTTGCCATACCTC 2176
Query 2145 AAAGTTCTCCTTGGCGAGAATCCGACACATTTTCTT-ATGGTCAAGACACAATCTACCAC 2203
|||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 2177 AAAGTTGTCCTTGGCGAGAATCCAACACATTTT-TTCATGGTCAAGACACAATCTACCAC 2235
Query 2204 CAACGGTTTCGGCTTTATGTTTCAAAAGGGCTTTGAGTTGGTGCCTAATGTGTCCCGGGA 2263
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2236 CAACGGTTTCGGCTTTATGTTTCAAAAGGGCTTCGAGTTGGTGCCTAATGTGTCCCGAGA 2295
Query 2264 GAT-TGCGAAGCTTAGGACGAGCGAGAAGCTAAACGAGATGGAGAAGAGATGGTTTGATA 2322
|| | | ||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2296 AATCT-CAAAGCTAAGGACGAGCGAGAAGCTAAATGAGATGGAGAAAAGATGGTTTGATA 2354
Query 2323 AACAACTTCCATACACAACCGATGATACATCAAATCCTATAACCCTTTACCGATTCCGCG 2382
| |||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 2355 ATCAACTTCCATACACAACCGATGATACATCAAATCCTATTACTCTTTACAGATTCCGCG 2414
Query 2383 GGTTGTTTATGATAACCGGAGTTTCATTCGCTTTCGCTCTTGCAGTACTTCTTATTCTCT 2442
| |||||||| || | ||| ||||||||||||||||||||||| |||||| | |||||||
Sbjct 2415 GTTTGTTTATAATCATCGGTGTTTCATTCGCTTTCGCTCTTGCGGTACTTGTCATTCTCT 2474
Query 2443 GGCTCCGCGACGAATGG-ACAGGTCTTGTGGATTCGGTTAAACTATTCATCTCGCGACAA 2501
| ||||||||| ||||| | | ||||||||| | || ||| | |||| | || |
Sbjct 2475 GTCTCCGCGACAAATGGGAAAT-TCTTGTGGA--C----AATCTAGACCTCTCACAACGA 2527
Query 2502 ATTATACATTTCAGGATCCACTTTGCAAGAAATATCCATCCTAGTCCTCTCGATGACCCC 2561
||| |||||||||||||||||||| |||| ||| ||| ||||||| || |||||||||
Sbjct 2528 CTTAGACATTTCAGGATCCACTTTGTAAGATCTATACATACTAGTCCCCTTGATGACCCC 2587
Query 2562 ATTGGCGGAAA-TGCAGTTCAAATGGCTCAACGTAACAGACAATAGGAACAGATTA 2616
||||||| ||| ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct 2588 ATTGGCG-AAACTGCGGTTCAAATGGCTCAACAAAATAGACAATAGGAACTGATTA 2642
> AT5G48400.2 | Symbols: ATGLR1.2, GLR1.2 | Glutamate receptor
family protein | chr5:19616244-19619246 FORWARD LENGTH=2604
Length=2604
Score = 2981 bits (1614), Expect = 0.0
Identities = 2315/2642 (88%), Gaps = 94/2642 (4%)
Strand=Plus/Plus
Query 21 ATGGAGAGATTTTGT-TTCAAAAATCCAATTTTGCTATCGTTTCTTCTTGTTTTGCTTCT 79
|||| |||| ||||| ||| ||| ||||||||||||||||||||||||||| ||||| |
Sbjct 1 ATGGTGAGAATTTGTATTC-AAACCCCAATTTTGCTATCGTTTCTTCTTGTTCTGCTTTT 59
Query 80 CTTCATCTCC-A-----TTGCTTCTACTCAAAACGACGACGTTGATCATGGACGTAAACG 133
|||||||||| | ||||||| | ||||||| | || ||| || || ||||||
Sbjct 60 CTTCATCTCCAACTGTTTTGCTTCGAGTCAAAAC-A--AC---GATGAT-GA--TAAACG 110
Query 134 GGTTCAGATCCGGGTCGGGTTGGTATTGGATTTGGGTTCCGTGGAAGGGAAGATAGTGAA 193
| ||| | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 111 GATTCGGGTCCGGGTCGGGTTGGTTTTGGATTTGGGTTCCGTGGAAGGGAAGATAGTGCG 170
Query 194 AAGCTCTGTTTCAATGGCTCTTTCAGATTTCTACG-CTATTAACAATGATTACAAAACTA 252
|| |||||||| ||||||||||| |||||||||| | | | ||||||| |||||||| |
Sbjct 171 GAGTTCTGTTTCCATGGCTCTTTCTGATTTCTACGAC-AATCACAATGACTACAAAACAA 229
Query 253 GAGTCTCT-TTTTCAGTCAGAAACTCTCATGGAGAGCCTCTTCTTGCTCTTGCTTCTGCT 311
|| ||||| |||| ||||||| | |||||||||||||||||||||||||||| ||| | |
Sbjct 230 GACTCTCTCTTTT-AGTCAGAGATTCTCATGGAGAGCCTCTTCTTGCTCTTGATTCAGTT 288
Query 312 GTAGATCTGTTGCAAACTGAAGGAGTGGAAGCGATAATTGGCGGGAATTCGTTGTTGGAA 371
|||||| || ||||||| ||||||||| |||| |||||||||||||| |||||| | |||
Sbjct 289 GTAGATTTGCTGCAAACAGAAGGAGTGCAAGCAATAATTGGCGGGAACTCGTTGCTAGAA 348
Query 372 GCGAAGCTTTTAGG-GGAACTTGGAGAGCAAGCTAGGGTTCCTGTGATTACGCTTAACTC 430
||||||||||| || ||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 349 GCGAAGCTTTT-GGCGGAACTTGGAGAGAAAGCTAGGGTTCCTGTGATTTCACTTAACTC 407
Query 431 TCCCATGTCATTGTCATTGAGTAAATACAGTTACTTGATCCAAGCCACACATGATTCTGT 490
||||||||||||||||||||| ||||||| | |||||||||||||||||||| | ||||
Sbjct 408 TCCCATGTCATTGTCATTGAGCAAATACACTCACTTGATCCAAGCCACACATAACTCTGC 467
Query 491 CTCTGAGGCTAAGGGAATTATAGCTTTCATCAATGGGTTTGATTGGAACAGTGTTGCTCT 550
|||||||| ||| ||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 468 CTCTGAGGTTAAAGGAATTACAGCTTTCCTCCATGGGTTTGATTGGAACAGTGTTGCTCT 527
Query 551 T-CTTTATGAAGATCATGATGACTGGAGAGAGAGTATGCATTTTATGGTAGACCATTTCC 609
| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 528 TGTTTTA-GAAGATCACGATGACTGGAGAGAGAGTATGCATTTTATGGTGGACCATTTCC 586
Query 610 ATGAGAACAACGTTCGTGTACAGTCCAAGGTTGGTTTTACTGTCTCTTCAAGTGAGGATT 669
||||||||||||||| ||||||||||||||||| ||||| |||| |||| ||||||||||
Sbjct 587 ATGAGAACAACGTTCATGTACAGTCCAAGGTTGCTTTTAGTGTCACTTCGAGTGAGGATT 646
Query 670 -TTGTGATGGATCGTTTACAGAAACTGAAGGACTTAGGAACAACAGTCTTTGTTGTTCAC 728
|| |||||||||| |||| | | || |||||||| |||||||| |||||||||||||||
Sbjct 647 CTT-TGATGGATCGATTACGGGAGCTTAAGGACTTGGGAACAACTGTCTTTGTTGTTCAC 705
Query 729 TTGTCTAG-AGTTATTGCAACTCATCTCTTCCCATGTGCTGGGAGATTAGGGTTGATGGG 787
|||||| | |||||||||||||| ||||||||||||||||| || ||||||| |||||||
Sbjct 706 TTGTCT-GAAGTTATTGCAACTCGTCTCTTCCCATGTGCTGAGAAATTAGGGATGATGGG 764
Query 788 TGAAGGGTTTGTTTGGATCCTCACTACTA-AAACAATGAACAG-CTTCAATGA--A-AAC 842
||||||||||| |||||| || ||| | | || | |||| ||| ||| |||| | |
Sbjct 765 TGAAGGGTTTGCTTGGATTCTTACTTCCAGAAGC-ATGAGCAGTTTTC-ATGATCAGTTC 822
Query 843 ATTGACGATTTCTCAAAAGAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCCTACATTCCA 902
||||||||||| |||| |||||||||||||||||||||||||||||||| || || |||
Sbjct 823 ATTGACGATTTAACAAAGGAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCTTATATACCA 882
Query 903 ATGTCTAAAGAGCTTCGA-AATTTCACTTTAAGATGGAGAAAATCA-TTGCTGGTTGAAG 960
||||| |||||||||| | || |||||||| |||||||||||| || | || |||||||
Sbjct 883 ATGTCAAAAGAGCTTC-ACAACTTCACTTTGAGATGGAGAAAAACACTCCCT-GTTGAAG 940
Query 961 AAG---C-----G-GAGATAACTCAGTTGAGTATCTCTGGCGTATGGGCTCACGATATCG 1011
||| | | ||||| |||| ||||||||||||||||||||||||||| ||| |||
Sbjct 941 AAGTTACTGGGAGTGAGATTACTCGGTTGAGTATCTCTGGCGTATGGGCTCATGATGTCG 1000
Query 1012 CTTGG-GCTCTAGCGAGTGCAGCGGAAGTTACAAGGATGCCAAATGT-ATCATCAACTCT 1069
||||| | ||| ||||||||||| ||||| ||||||||||||| ||| | ||||||||||
Sbjct 1001 CTTGGAG-TCTGGCGAGTGCAGCTGAAGTGACAAGGATGCCAACTGTGA-CATCAACTCT 1058
Query 1070 CCTTGAGGCAATCTCAGAGAGTAGATTTAAGGGTTTGAGTGGTGA-TTTCCAGTTGCATG 1128
||||||||| || ||| || || ||||||||| |||||||| | ||| |||||| |||
Sbjct 1059 CCTTGAGGCCATAAAAGAAAGCAGGTTTAAGGGTCTGAGTGGTAACTTT-CAGTTGGATG 1117
Query 1129 ATAAGAAGTTGTTATCAAAAAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAGAA 1188
||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 ATATGAAGTTGTTATCAGACAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAGAA 1177
Query 1189 GGGTAGGATACTGGAATTCTAATGGTAGTTTCAGCAGTAGAAGACATTTATCTTCTACTC 1248
||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1178 GGGTAGGATTCTGGAATTCTAATGGTAGTTTCAGCAATAGAAGACAATTATCTTCTACTC 1237
Query 1249 ATGACAAGCTGGAGACCATCATTTGGCCCGGTGGGTCTGCTCAAAGTCCGAAAGGGAGTA 1308
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1238 ATGACAATCTGGAGACCATAATTTGGCCCGGTGGGTCTGCTCAAAGTCCGAAAGGGAGAA 1297
Query 1309 GTCTAAGAGAGAGCGGTAGAAAAAAGCTGAGGGTT-TTGGTTACATCTAGCAATAGATTT 1367
|||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 1298 GTCTAAGAGAGAGCGGTAGAAAAAAGCTTAGGGTTCTT-GTTACATCTAGCAATAGATTC 1356
Query 1368 CCAAGACTGATGAAAGTTGAGACTGATCCGGTAACAAAT--GA-AGTAATTGTCGAAGGG 1424
||||||||||||||||| ||||||||||| ||||| || || | |||||||||||||
Sbjct 1357 CCAAGACTGATGAAAGTGGAGACTGATCCAATAACACATGAGATAACAATTGTCGAAGGG 1416
Query 1425 TTCTGTATAGAAGCT-TTTCGGGCTTCGATTAG-TCCTTTCAACTATGAAGTTGAGTACA 1482
||||||||||||| | |||| ||| || ||| | ||||||||||||||||| |||||||
Sbjct 1417 TTCTGTATAGAAG-TCTTTCAGGCATCCATT-GCACCTTTCAACTATGAAGTGGAGTACA 1474
Query 1483 TACCTTGGCTTAATGGAAGTAACTACGA-CAATCTTGCATATGCACTT-AGTAGCCAGAA 1540
||| |||||| ||||||| ||||||| | ||| ||||||||||||||| | |||||||||
Sbjct 1475 TACGTTGGCTCAATGGAACTAACTAC-ACCAAGCTTGCATATGCACTTCA-TAGCCAGAA 1532
Query 1541 AGACAAATACGATGCAGCTGTGGGAGATATTACAATCACTTCCAATAGATCGATGTATGT 1600
||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1533 AGACAAATATGATGCTGCTGTGGGAGATATTACAATTACTTCCGATAGATCGATGTATGT 1592
Query 1601 TGATTTTACGTTGCCATTCACCGAAATGGGTCTTGGAATTGTAGCA-CTAAAGGAGAGAA 1659
||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||
Sbjct 1593 TGATTTTACGTTGCCATACACTGAAATGGGTCTTGGAATTGTAGCAGC-AAAGGAGAGAA 1651
Query 1660 GTATGTGGGTGTTCTTCCAACCTTTAACACCAGACCTATGGATAACAAGTGCATCTTTCT 1719
||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||
Sbjct 1652 GTATGTGGGTGTTCTTCCAACCTCTAACACCAAACCTTTGGATAACAAGTGCAGCTTTCT 1711
Query 1720 TTGTTTTGACCGGCATTATAGTTTGGTTGATAGAAAGATCTGAGAACAAAGAGTTCCAAG 1779
|||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1712 TTGTCTTGACGGGTATTATAGTTTGGTTGATAGAAAGAGCTGAGAACAAAGAGTTCCAAG 1771
Query 1780 GATCTTGGCCACAACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCTTGTTTATG 1839
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1772 GATCTTGGCCTCAACAGATTGGAGTTGTGATTTGGTTTGGCTTCTCTACCCTTGTTTATG 1831
Query 1840 CTCA-CAGGGAGAGGCTAAAACACAACTTATCAAGATTTGTAGTTACAGTTTGGGTATTT 1898
|||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 CTCATC-GGGAGAAGCTACAACACAACTTATCAAGATTTGTAGTTACAGTTTGGGTATTT 1890
Query 1899 GCGGTGCTCATATTGACCGCTAGTTACACTGCAACATTGACATCAATGATGACGGTGCAA 1958
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1891 GCGGTGCTCATATTGGTTACAAGTTACACTGCAACATTGACATCAATGATGACGGTGCAA 1950
Query 1959 CAGATACGATTCAACTCAAATGAAGACTACGTGGGTCACCTTTCGGGCTCCCTTATCGCA 2018
|| |||||||||||| | |||||||| || ||||||||||| ||||| ||||| ||||||
Sbjct 1951 CAAATACGATTCAACGCCAATGAAGATTATGTGGGTCACCTCTCGGGATCCCTCATCGCA 2010
Query 2019 AATGTGGCTCTCACTAGTTCCAGCCTCCGAGCAATGAGATCACTAGGTCTCAATAGTTCT 2078
|||| ||| ||||| | |||||||||| |||||||||||| | | |||||||||| |||
Sbjct 2011 AATGCGGCCCTCACCAATTCCAGCCTCAGAGCAATGAGATTATTGGGTCTCAATACTTCA 2070
Query 2079 GCAGATTATGCTCACGCCTTGCTGAACAAGACTGTCTCTTTTGTTGTT-GATGAGTTACC 2137
| |||||||||||| || ||| |||| || | |||||| | | ||||| | |||||| ||
Sbjct 2071 GAAGATTATGCTCAAGCTTTGATGAATAAAAGTGTCTCATATATTGTTAG-TGAGTTGCC 2129
Query 2138 ATACCTCAAAGTTCTCCTTGGCGAGAATCC-GACACATTTTCTTATGGTCAAGACACAAT 2196
|||||| ||| | ||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 2130 ATACCTGAAAATCCTCCTTGGCGAGAATCCTGG-ACATTTTCTCATGGTCAAGACACAAT 2188
Query 2197 CTACCACCAACGGTTTCGGCTTTATGTTTCAAAAGGGCTTTGAGTTGGTGCCTAATGTGT 2256
|||||||||| ||||| ||||| ||||| || ||||| | ||||||| |||||||||||
Sbjct 2189 CTACCACCAATGGTTTTGGCTTCATGTTCCAGAAGGGGTCCGAGTTGGCGCCTAATGTGT 2248
Query 2257 CCCGGGAGATTGCGAAGCTTAGGACGAGCGAGAAGCTAAACGAGATGGAGAAGA-GATGG 2315
||||||||||||||||||| ||||| ||||||| ||||||||||||||||| || |||||
Sbjct 2249 CCCGGGAGATTGCGAAGCTGAGGACAAGCGAGAGGCTAAACGAGATGGAGA-GAAGATGG 2307
Query 2316 TTTGATAAACAACTTCCATACACAACCGATGATACATCAAATCCTATAACCCTTTACCGA 2375
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2308 TTTGATAAACAGCTTCCATACACAACCGATGATACATCAAATCCTATAACCCTATATAGA 2367
Query 2376 TTCCGCGGGTTGTTTATGATAACCGGAGTTTCATTCGCTTTCGCTCTTGCAGTACTTCTT 2435
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2368 TTCCGTGGTTTGTTTATGATCACCGGAGTTTCATTCGCTTTCGCTCTTGCAGTACTTCTC 2427
Query 2436 ATTCTCTGGCTCCGCGAC-GAATGG-ACAGGTC-TTGTGGATTCGGTTAA-ACTATTCAT 2491
||||| |||||||| || || ||| | | || ||||| ||||||| || | ||| | |
Sbjct 2428 ATTCTTTGGCTCCGAGAAAGA-TGGGAAA--TCCTTGTGAATTCGGTCAATA-TATACTT 2483
Query 2492 CTCGCGACAAATTATACATTTCAGGATCCACTTTGCAAGAAATATCCATCCTAGTCC--T 2549
||| | || | ||| |||||||||||||| ||| |||||| ||||||||||||||| |
Sbjct 2484 CTCACAACGACTTAGACATTTCAGGATCCTCTTCACAAGAACTATCCATCCTAGTCCCCT 2543
Query 2550 C----TCGATGACCCCATTGGCG-GAAATGCAGTTCAAATGGCTCAACGTAACAGACAAT 2604
| ||||| |||||||||||| ||| ||| ||||||||||||||||||||||||| ||
Sbjct 2544 CGGCCTCGATAACCCCATTGGCGAGAA-TGCGGTTCAAATGGCTCAACGTAACAGACGAT 2602
Query 2605 AG 2606
||
Sbjct 2603 AG 2604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130383884857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5