BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949259
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48460.1 | Symbols: | Actin binding Calponin homology (CH) ... 3339 0.0
> AT5G48460.1 | Symbols: | Actin binding Calponin homology (CH)
domain-containing protein | chr5:19636101-19639488 REVERSE
LENGTH=2212
Length=2212
Score = 3339 bits (1808), Expect = 0.0
Identities = 1941/2006 (97%), Gaps = 5/2006 (0%)
Strand=Plus/Plus
Query 3 AGA-TCGAAGTAGAGAAAAATGTCAGGTTTCGTCGGGATTTTGGTATCGGATCCATGGTT 61
||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 105 AGATTCGGAGTAGAGAAAAATGTCAGGATTCGTCGGGATTTTGGTATCGGATCCATGGTT 164
Query 62 ACAGAACCAATTCACGCAAGTGGAGCTTCGGAGTTTGAAATCTCACTTCACGAGCATGAA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ACAGAACCAATTCACGCAAGTGGAGCTTCGGAGTTTGAAATCTCACTTCACGAGCATGAA 224
Query 122 GAGAGAGAGCGGGAAGCTTACGGTATCAGACCTCGCGTCAAGGATGGGGAAATCAAAAGT 181
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 225 GAGAGAGAGCGGGAAGCTAACAGTATCAGACCTCGCGTCAAGGATGGGGAAATCAAAAGT 284
Query 182 AGTCGGAGATCAGAATCTAAGCAACGAAGAAAGATCGACTTTGATCCAAAATTTTCATCC 241
||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 285 AGTTGGAGATCAGAATCTAAGCAACGAAGAACGAGCGACTTTGATCCAAAATTTTCATCC 344
Query 242 GAATTTGAATGATGAAGTCGATTTCGAGTTTTACTTAAGGATTTATTTGAATCTTCAAGC 301
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 345 GAATTTGAATGATGAAGTCGATTTCGAGTTTTACTTAAGGATTTATCTGAATCTTCAAGC 404
Query 302 TCATGTAAACGCAATAATCGGAAGCGGTGTTAAAAACTCGTCTGCGTTTCTTAAAGCAGC 361
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 405 GCATGTAAACGCAATAATCGGAAGCGGTGTTAAAAACTCATCTGCGTTTCTTAAAGCAGC 464
Query 362 TACAACAACTTTGTTGCATACTATTAGTGATTCTGAGAAATCTTCTTATGTTGCTCATAT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TACAACAACTTTGTTGCATACTATTAGTGATTCTGAGAAATCTTCTTATGTTGCTCATAT 524
Query 422 CAATAATTATCTCTCTGGAGATGAGTTTCTAAACAAGTACCTTCCGATTAATCCGTCTTC 481
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 525 CAATAATTATCTCTCTGGAGATGAGTTTCTAAACAAGTGCCTTCCGATTAATCCGTCTTC 584
Query 482 GAATGATTTATTCGAAGTTGCAAAAGACGGTGTTTTGCTTTGTAAACTTATAAATGTGGC 541
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 585 GAATGATCTATTCGAAGTTGCAAAAGATGGTGTTTTGCTTTGTAAGCTTATAAATGTGGC 644
Query 542 CGTTCCTGGAACGATCGATGAACGAGCGATTAATACTAAGAGTATGCTTAATCCATGGGA 601
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GGTTCCTGGAACAATCGATGAACGAGCGATTAATACTAAGAGTATGCTTAATCCATGGGA 704
Query 602 GAGAAATGAAAATCATACGCTTTGTCTTAATTCTGCCAAGGCTATTGGTTGTACTGTGGT 661
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 705 GAGAAATGAAAATCATACGCTTTGTCTTAACTCTGCCAAGGCTATTGGGTGTACTGTGGT 764
Query 662 TAATATAGGAACTCAAGATATCATTGAAGGAAGGCGTCATCTTGTGCTCGGTGTGATTTC 721
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 765 TAATATAGGAACACAAGATATCATTGAAGGAAGGCGTCATCTTGTGCTCGGTGTGATCTC 824
Query 722 TCAAATCATTAAGATACAATTGCTAGCAGACCTAAACTTGAAGAAAACTCCCCAGCTGGT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TCAAATCATTAAGATACAATTGCTAGCAGACCTAAACTTGAAGAAAACTCCCCAGCTGGT 884
Query 782 GGAGTTGGTTGGTGATAGCAAGGATGTGGAAGAGCTGATGAGTTTACCACCAGAGAAGAT 841
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 885 GGAGTTGGTCGGTGATAGCAAGGATGTGGAAGAGCTAATGAGTTTACCACCTGAGAAGAT 944
Query 842 CTTATTGAGATGGATGAATTTTCAGTTAAGAAAAACTGAATACAAGAAAACCGTCACAAA 901
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 945 CTTATTGAGATGGATGAATTTTCAGTTGAGAAAAACTGAATACAAGAAAACCGTCACAAA 1004
Query 902 CTTCTCCTCTGATGTAAAGGATGCGGAAGCTTACACTAATCTATTAAATGTCCTGGCACC 961
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CTTCTCTTCTGATGTTAAGGATGCGGAAGCTTACACTAATCTATTAAATGTCCTGGCACC 1064
Query 962 AGAGCACAAGAATCCATCACATTTAGCAGTTAAAAGCTCATTTGAGAGAGCAACACTTGT 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1065 AGAGCACAAGAATCCATCACATTTAGCAGTTAAAAGCTCATTTGAGAGAGCAAAACTTGT 1124
Query 1022 TCTCGAACATGCAGACAGAATGGGATGCAGGAGATACTTGACGGCGAAGGATATTGTTGA 1081
||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1125 TCTCGAACATGCAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGA 1184
Query 1082 GGGTTCCCCGAATCTTAATCTTGCTTTTGTAGCACATATTTTCCAGCACAGGAACGGCCT 1141
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1185 GGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGGAACGGACT 1244
Query 1142 TTCAACACAAACGAAACAGATATCGTTTCTTGAAAATCTAGCTGATGACATTCAAATTTC 1201
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1245 TTCAACACAAACGAAACAGATATCTTTTCTTGAAAATCTAGCTGATGACATTCAAATTTC 1304
Query 1202 AAGAGAAGAAAAAGCATTCCGGTTTTGGATTAACAGCTTTGATGGTTCACTATACATAAA 1261
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1305 AAGAGAAGAAAAAGCATTCCGGTTTTGGATTAACAGCTTTGATGGTTCAGTATACATAAA 1364
Query 1262 CAACGTGTTTGAAGATCTCAGAGATGGGTGGATACTATTGCAGACACTAGACAAAGTGTC 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CAACGTGTTTGAAGATCTCAGAGATGGGTGGATACTATTGCAGACACTAGACAAAGTGTC 1424
Query 1322 TCCAGGCATTGTTAATTGGAAAGTAGCAAGCAAGCCTCCAATCAAATTGCCATTCAAGAA 1381
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1425 TCCAGGCATTGTTAATTGGAAAGTATCAAGCAAGCCTCCAATCAAATTGCCATTCAAGAA 1484
Query 1382 AGTAGAAAACTGCAATCAGGTTGTGAAATTAGGGAAGCAGCTCAAGTTCTCTTTGGTTAA 1441
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 AGTAGAAAACTGTAATCAAGTTGTGAAATTAGGGAAGCAGCTCAAGTTCTCTTTGGTTAA 1544
Query 1442 CATTGCTGGAAATGACATTGTTCAAGGAAACAAGAAACTCATACTAGCATACTTGTGGCA 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1545 CATTGCTGGAAATGACATTGTTCAAGGAAACAAGAAACTCATACTAGCATACTTATGGCA 1604
Query 1502 ATTGATGAGATACAACATCCTGCAACTTCTTAAGAACTTGAGATTACATTCCAACGGCAA 1561
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1605 ATTGATGAGATACAACATCCTGCAACTTCTTAAGAACTTGAGACTACATTCAAACGGCAA 1664
Query 1562 AGAAATAACAGACGTTGATATATTGGAATGGGCAAATGCTAAAGTGAGAAACAATGGATG 1621
||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1665 AGAGATAACAGACGCTGATATATTGGAATGGGCAAATGCTAAAGTGAGAAACAACGGATG 1724
Query 1622 CAAAACCCACATGTACAGTTTCAGGGACAAGAGCTTATCCGATGGGATATTTTTCTTGGA 1681
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1725 CAAAACACGCATGTACAGTTTCAGGGACAAGAGCTTATCCGATGGGGTATTTTTCTTGGA 1784
Query 1682 GCTGCTAAGTTCAGTGCAGCCAAGATCCGTAAACTGGAGCCTTGTTACAAACGGAGTGAC 1741
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1785 GCTGCTGAGTTCAGTGCAGCCAAGATCCGTAAACTGGAGTCTTGTTACAAACGGAGTTAC 1844
Query 1742 AGATGAAGAGAAAAAGATGAATGCAACTTATGTGATTAGCATAGCCAGGAAACTTGGTTG 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 AGATGAAGAGAAAAAGATGAATGCAACTTATGTGATTAGCATAGCCAGGAAACTTGGTTG 1904
Query 1802 CTCCATTTTCTTACTCCCTGAAGATATAATTGAGGTGAATCAAAAGATGATGCTGACATT 1861
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1905 CTCCATTTTCTTACTCCCTGAAGATATAATCGAGGTGAATCAGAAGATGATGCTGACATT 1964
Query 1862 GACGGCGAGTATAATGTATTGGACTCTTAAA-CAACCTCTTCATCTTAATAAGCCTATCG 1920
||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 1965 GACGGCGAGTATAATGTATTGGACTCT-AAAGCAACCTCTTCATCTGAATAAGCCTATCG 2023
Query 1921 GATCTCCCGATAGCCACAATGGAAGTCTACTCGACGATTCTACTTCAGATTCCTCCATAG 1980
||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| ||||
Sbjct 2024 GATCTCCTGATAGCCACAATGGAAGTTTACTCGATGATTCTACGTCAGATTCCTCTATAG 2083
Query 1981 AATAAAAATGTTTTAC-GATGAAATT 2005
||||||| |||||||| | |||||||
Sbjct 2084 AATAAAATTGTTTTACTG-TGAAATT 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99346878555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5