BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949261
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48480.1 | Symbols: | Lactoylglutathione lyase / glyoxalase... 815 0.0
> AT5G48480.1 | Symbols: | Lactoylglutathione lyase / glyoxalase
I family protein | chr5:19644675-19645889 FORWARD LENGTH=871
Length=871
Score = 815 bits (441), Expect = 0.0
Identities = 540/586 (92%), Gaps = 13/586 (2%)
Strand=Plus/Plus
Query 4 TCATTTCTCTC-TAACCGTAAACGAATCTTTCTTCTCTAAG--TT-TTTTCTCTCTGCGA 59
||||||||||| ||||||||||||||||| ||||||| ||| || ||||||||||||||
Sbjct 81 TCATTTCTCTCTTAACCGTAAACGAATCTCTCTTCTCAAAGTTTTATTTTCTCTCTGCGA 140
Query 60 TGGCTCAAGAAGATGTTACTCCTGCTGCTACTAACGGCGCTGCTCCGGTGGAGACGCCTC 119
|||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||| ||
Sbjct 141 TGGCTCAAGAAGATGTTACTGCTGTTGCTACTAACGGTGCTGGTCCGGTGGAGACGCATC 200
Query 120 TTGTCTTCACTGAGATCAAGCAGATGTTGATCGTTGAAGCACAAAAAGTCGGTGACGCTG 179
|||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 201 TTGTCTTCACTGAGTTCAAGCAGATGTTGCTCGTTGAAGCTCAAAAGGTCGGTGACGCTG 260
Query 180 TCACTTTCTACAAATCTGCTTTTGGTGCGATCGAGTCTGGTCATTCTCTTTACCCTAAGC 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TTACTTTCTACAAATCTGCTTTTGGTGCGATCGAGTCTGGTCATTCTCTTTACCCTAAGC 320
Query 240 GTAAGCTTGACCAAGAGCTTCCTCATGTTCTCTCTTCTGAGCTTAACCTCGCTGGCTCTT 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 321 GTAAGCTTGACCAAGAGCTTCCTCATGTTCTCTCTTCTGAGCTTAATCTCGCTGGCTCTT 380
Query 300 CCTTCGTTGTTTGCGACGTTTCCTCTCTCCCTGGTTTTTCTAATGCGAAATCGGAAGGTT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 381 CCTTCGTTGTTTGCGACGTTTCCTCTCTCCCTGGTTTTTCTACTGCGAAATCGGAAGGTT 440
Query 360 CGAGAGTGAATCATCTCCTCGGAACTAATAACGTTGAAGCCGCCGTTGCGAAAGCTGTCG 419
|| |||||| | ||| ||||||||||| | | |||||||||||||||||||||||| |
Sbjct 441 CGGGAGTGACTTTTCTTCTCGGAACTAAGGATGCTGAAGCCGCCGTTGCGAAAGCTGTTG 500
Query 420 ATGCCGGAGCTGTGAAAGTGGAGGTTACGGAGGCTGAAGTTGAACTGGGATTCAAAGGAA 479
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 501 ACGCCGGAGCTGTGAAAGTGGAGGTTACGGAGGCAGAAGTTGAACTGGGATTCAAAGGAA 560
Query 480 AAGTCACGGATCCTTTTGGTGTCACTTGGATCTTTGAGGAGAAGAAGACCGAGAACGTCG 539
|||| ||||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 561 AAGTTACGGATCCTTTTGGTGTCACTTGGATCTTCGCGGAGAAGAAGACCGTGA---TC- 616
Query 540 TTGAGAACGACGAGAACAAAGAGGTTTAAAAACTGTCGTCGGATCT 585
| ||||||||||||||||||||| || ||||||||||||||
Sbjct 617 ---AC--CGACGAGAACAAAGAGGTTTAGAATCTGTCGTCGGATCT 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5