BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949262

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48485.1 | Symbols: DIR1 | Bifunctional inhibitor/lipid-tran...   438    2e-122


> AT5G48485.1 | Symbols: DIR1 | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | 
chr5:19646232-19646802 REVERSE LENGTH=571
Length=571

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 358/413 (87%), Gaps = 22/413 (5%)
 Strand=Plus/Plus

Query  1    CAAACATACATAAAAAGAAAGAGGAGGCT-A-AA-ATGGCGAGCAAG-AAGACGGCTATG  56
            |||||||| | ||||||| |||||||| | | || |||||||||||| ||| | ||||||
Sbjct  143  CAAACATATAGAAAAAGAGAGAGGAGGATAATAATATGGCGAGCAAGAAAG-CAGCTATG  201

Query  57   GCTATGATGGTGATGATCGTGGTAGTGATGGCTATGTTAGTCGATAGGTCAGTTGCGATT  116
            | |||||||| ||||||||| | | | ||||||||||| |||||||  ||||| ||||| 
Sbjct  202  GTTATGATGGCGATGATCGT-G-A-TAATGGCTATGTTGGTCGATACATCAGTAGCGATA  258

Query  117  GACCTCTGTGGCATGACCCAAGATGAGTTGAATGAGTGCAAACCAGCGGTTAGCAAGGAA  176
            || ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  259  GATCTCTGCGGCATGAGCCAGGATGAGTTGAATGAGTGCAAACCAGCGGTTAGCAAGGAG  318

Query  177  AATCCAACGAGCCCATCACAGCCTTGCTGCTCCGCTCTACAACACGCCGATTTCACCTGT  236
            ||||| |||||||||||||||||||||||| ||||||| |||||||| |||||  | |||
Sbjct  319  AATCCGACGAGCCCATCACAGCCTTGCTGCACCGCTCTGCAACACGCTGATTTTGCATGT  378

Query  237  CTTTGTGGCTACAAAAACTCTCCATGGCTCGGTTCTTTCGGTGTTGATCCCGAACTCGCT  296
            |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  379  CTTTGTGGTTACAAGAACTCTCCATGGCTCGGTTCTTTCGGTGTTGATCCTGAACTCGCT  438

Query  297  TCTGGTCTCCCCAAACAGTGTGGCCTAGCCAACGCCCCAACTTGTTAAATA-AGCT-TGG  354
            |||| |||||||||||||||||| ||||||||||||||||||||||||| | | || || 
Sbjct  439  TCTGCTCTCCCCAAACAGTGTGGTCTAGCCAACGCCCCAACTTGTTAAA-AGA-CTCTG-  495

Query  355  TTT--GTGTGT--ATGTAGTT-----CTCCTATTCTAAATATCGGATGTTATT  398
            | |  ||||||  ||||  ||     |||||||||||||||||||||||||||
Sbjct  496  TATACGTGTGTTTATGTTTTTTATTACTCCTATTCTAAATATCGGATGTTATT  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107099600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5