BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949262 Length=424 Score E Sequences producing significant alignments: (Bits) Value AT5G48485.1 | Symbols: DIR1 | Bifunctional inhibitor/lipid-tran... 438 2e-122 > AT5G48485.1 | Symbols: DIR1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:19646232-19646802 REVERSE LENGTH=571 Length=571 Score = 438 bits (237), Expect = 2e-122 Identities = 358/413 (87%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 1 CAAACATACATAAAAAGAAAGAGGAGGCT-A-AA-ATGGCGAGCAAG-AAGACGGCTATG 56 |||||||| | ||||||| |||||||| | | || |||||||||||| ||| | |||||| Sbjct 143 CAAACATATAGAAAAAGAGAGAGGAGGATAATAATATGGCGAGCAAGAAAG-CAGCTATG 201 Query 57 GCTATGATGGTGATGATCGTGGTAGTGATGGCTATGTTAGTCGATAGGTCAGTTGCGATT 116 | |||||||| ||||||||| | | | ||||||||||| ||||||| ||||| ||||| Sbjct 202 GTTATGATGGCGATGATCGT-G-A-TAATGGCTATGTTGGTCGATACATCAGTAGCGATA 258 Query 117 GACCTCTGTGGCATGACCCAAGATGAGTTGAATGAGTGCAAACCAGCGGTTAGCAAGGAA 176 || ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 259 GATCTCTGCGGCATGAGCCAGGATGAGTTGAATGAGTGCAAACCAGCGGTTAGCAAGGAG 318 Query 177 AATCCAACGAGCCCATCACAGCCTTGCTGCTCCGCTCTACAACACGCCGATTTCACCTGT 236 ||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| | ||| Sbjct 319 AATCCGACGAGCCCATCACAGCCTTGCTGCACCGCTCTGCAACACGCTGATTTTGCATGT 378 Query 237 CTTTGTGGCTACAAAAACTCTCCATGGCTCGGTTCTTTCGGTGTTGATCCCGAACTCGCT 296 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 379 CTTTGTGGTTACAAGAACTCTCCATGGCTCGGTTCTTTCGGTGTTGATCCTGAACTCGCT 438 Query 297 TCTGGTCTCCCCAAACAGTGTGGCCTAGCCAACGCCCCAACTTGTTAAATA-AGCT-TGG 354 |||| |||||||||||||||||| ||||||||||||||||||||||||| | | || || Sbjct 439 TCTGCTCTCCCCAAACAGTGTGGTCTAGCCAACGCCCCAACTTGTTAAA-AGA-CTCTG- 495 Query 355 TTT--GTGTGT--ATGTAGTT-----CTCCTATTCTAAATATCGGATGTTATT 398 | | |||||| |||| || ||||||||||||||||||||||||||| Sbjct 496 TATACGTGTGTTTATGTTTTTTATTACTCCTATTCTAAATATCGGATGTTATT 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20107099600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5