BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949285 Length=815 Score E Sequences producing significant alignments: (Bits) Value AT5G48630.2 | Symbols: | Cyclin family protein | chr5:19721503... 1205 0.0 > AT5G48630.2 | Symbols: | Cyclin family protein | chr5:19721503-19723168 REVERSE LENGTH=980 Length=980 Score = 1205 bits (652), Expect = 0.0 Identities = 706/733 (96%), Gaps = 0/733 (0%) Strand=Plus/Plus Query 65 CAAAGAGCTTAAGGACCCAGAAGAGGTCAATGTTGTTCATCCTCTTGATGCTCAGAGAGG 124 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 91 CAAAGAGCTTAAGGACCCAGAAGAGGTTAATGTTGTTCATCCTCTTGATGCTCAGAGAGG 150 Query 125 AATCTCTGTTGAAGATTTCAGACTCATTAAGCTTCACATGTCTAATTATATATCGAAACT 184 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 151 AATCTCTGTTGAAGATTTCAGACTCATTAAGCTTCATATGTCTAATTATATATCGAAACT 210 Query 185 GGCACAAAACATTAAGATTAGGCAAAGAGTTATTGCAACTGCAGTAACGTATATGCGTCG 244 ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 211 GGCACAACACATTAAGATTAGGCAAAGAGTTGTTGCAACTGCAGTAACCTATATGCGTCG 270 Query 245 CGTTTACACAAGAAAGAGTTTGTCGGAATACGAGCCTCGGCTTGTTGCTCCCACCTGCTT 304 ||||||||||||||||||||| ||||||| |||||||||||||||||||| || ||||| Sbjct 271 TGTTTACACAAGAAAGAGTTTGACGGAATATGAGCCTCGGCTTGTTGCTCCTACATGCTT 330 Query 305 GTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTTCTTGTCTTCTACAT 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 GTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTTCTTGTCTTCTACAT 390 Query 365 GAAAAAACTTTATGCTGATGAAAAGTTTAGATATGAGATCAAAGATATTCTGGAAATGGA 424 ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| Sbjct 391 GAAAAAACTTTATGCGGATGAAAAGTTTCGATATGAGATTAAAGATATTCTGGAAATGGA 450 Query 425 GATGAAGGTCTTGGAAGCTTTGAACTTCTATCTTGTTGTATTCCACCCATACCGATCTCT 484 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 451 GATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATATCGATCTCT 510 Query 485 GCCTGAGTTCTTGCAGGATTCTGGAATCAATGACACAAGTATGACTCATTTAACTTGGGG 544 |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| Sbjct 511 GCCTGAGTTCTTGCAGGATTCTGGAATCAATGACACTAGTATGACCCATCTAACTTGGGG 570 Query 545 TCTTGTCAACGACACATACAGAATGGATCTCATCCTTATACATCCGCCGTTTCTCATCAC 604 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || Sbjct 571 TCTTGTCAACGACACATATAGAATGGACCTCATCCTTATACATCCGCCGTTTCTCATAAC 630 Query 605 ACTTGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAGGACTTGGTTTGA 664 ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 631 ACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAAGACATGGTTTGA 690 Query 665 AGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTGGATTTCTA 724 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 691 AGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTAGATTTCTA 750 Query 725 TGAAAACCATAGACTGTTCACGGAGGAGAGAGTTCACGCCGCCTTCAACAAACTTGCTAC 784 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 751 TGAAAACCATAGACTGTTCACGGAAGAGAGAGTTCACGCCGCCTTCAACAAACTTGCTAC 810 Query 785 AAACCCGTAAAGT 797 |||||| |||||| Sbjct 811 AAACCCATAAAGT 823 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39684976130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5