BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949285
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48630.2 | Symbols: | Cyclin family protein | chr5:19721503... 1205 0.0
> AT5G48630.2 | Symbols: | Cyclin family protein | chr5:19721503-19723168
REVERSE LENGTH=980
Length=980
Score = 1205 bits (652), Expect = 0.0
Identities = 706/733 (96%), Gaps = 0/733 (0%)
Strand=Plus/Plus
Query 65 CAAAGAGCTTAAGGACCCAGAAGAGGTCAATGTTGTTCATCCTCTTGATGCTCAGAGAGG 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 91 CAAAGAGCTTAAGGACCCAGAAGAGGTTAATGTTGTTCATCCTCTTGATGCTCAGAGAGG 150
Query 125 AATCTCTGTTGAAGATTTCAGACTCATTAAGCTTCACATGTCTAATTATATATCGAAACT 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 151 AATCTCTGTTGAAGATTTCAGACTCATTAAGCTTCATATGTCTAATTATATATCGAAACT 210
Query 185 GGCACAAAACATTAAGATTAGGCAAAGAGTTATTGCAACTGCAGTAACGTATATGCGTCG 244
||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 211 GGCACAACACATTAAGATTAGGCAAAGAGTTGTTGCAACTGCAGTAACCTATATGCGTCG 270
Query 245 CGTTTACACAAGAAAGAGTTTGTCGGAATACGAGCCTCGGCTTGTTGCTCCCACCTGCTT 304
||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 271 TGTTTACACAAGAAAGAGTTTGACGGAATATGAGCCTCGGCTTGTTGCTCCTACATGCTT 330
Query 305 GTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTTCTTGTCTTCTACAT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTTCTTGTCTTCTACAT 390
Query 365 GAAAAAACTTTATGCTGATGAAAAGTTTAGATATGAGATCAAAGATATTCTGGAAATGGA 424
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 391 GAAAAAACTTTATGCGGATGAAAAGTTTCGATATGAGATTAAAGATATTCTGGAAATGGA 450
Query 425 GATGAAGGTCTTGGAAGCTTTGAACTTCTATCTTGTTGTATTCCACCCATACCGATCTCT 484
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 451 GATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATATCGATCTCT 510
Query 485 GCCTGAGTTCTTGCAGGATTCTGGAATCAATGACACAAGTATGACTCATTTAACTTGGGG 544
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 511 GCCTGAGTTCTTGCAGGATTCTGGAATCAATGACACTAGTATGACCCATCTAACTTGGGG 570
Query 545 TCTTGTCAACGACACATACAGAATGGATCTCATCCTTATACATCCGCCGTTTCTCATCAC 604
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 571 TCTTGTCAACGACACATATAGAATGGACCTCATCCTTATACATCCGCCGTTTCTCATAAC 630
Query 605 ACTTGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAGGACTTGGTTTGA 664
||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 631 ACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAAGACATGGTTTGA 690
Query 665 AGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTGGATTTCTA 724
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 691 AGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTAGATTTCTA 750
Query 725 TGAAAACCATAGACTGTTCACGGAGGAGAGAGTTCACGCCGCCTTCAACAAACTTGCTAC 784
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 751 TGAAAACCATAGACTGTTCACGGAAGAGAGAGTTCACGCCGCCTTCAACAAACTTGCTAC 810
Query 785 AAACCCGTAAAGT 797
|||||| ||||||
Sbjct 811 AAACCCATAAAGT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39684976130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5