BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949295

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56350.1 | Symbols:  | Pyruvate kinase family protein | chr5...   545    1e-154
  AT5G37125.1 | Symbols:  | transposable element gene | chr5:1467...  62.1    5e-09 


> AT5G56350.1 | Symbols:  | Pyruvate kinase family protein | chr5:22820006-22822766 
REVERSE LENGTH=1982
Length=1982

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 318/329 (97%), Gaps = 1/329 (0%)
 Strand=Plus/Plus

Query  156   TCCCCCGCGAGACACAGCCTCATCTTCCGTGGTCTGATCCCAGTGCTCTACGCTGGATCC  215
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1522  TCCCCCGCGAGACACAGCCTTATCTTCCGTGGTCTGATCCCAGTGCTCTACGCTGGATCC  1581

Query  216   GCAAGAGCCTCACACGATGAATCAACAGAGGAGGCTATTGAGTTTGCTACTCAGTACGGG  275
             ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct  1582  GCAAGAGCCTCACACGATGAATCAACAGAAGAAGCTATCGAGTTTGCTACTCAGTACGGG  1641

Query  276   AAAGAGAAAGAGCTGTGCAAGACTGGAGACTCCGTTGTTTCTCTACTCCGAGTCGGTAAT  335
             |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct  1642  AAAGAGAAAGAGCTATGCAAGACTGGAGATTCCGTTGTTGCTCTACTCCGAGTCGGTAAT  1701

Query  336   GCTTCCGTGATCAAGATCTTAACCGTCAAGCGATGATTCCAATCAAAAA-TCACGTTTTT  394
             |||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||
Sbjct  1702  GCTTCCGTGATCAAGATCTTGACCGTCAAGTGATGATTCCACTCAAAAATTCACGTTTTT  1761

Query  395   GGCGTTTGGGGAACGCTACTTTAAACGTTTTATTATGAAACTATTCAAGATTGTGATTAA  454
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1762  GGCGTTTGGGGAACGCTACTTTAAACGTTTTATTATGAAACTATTCAAGATTGTGATTAA  1821

Query  455   AATCTTGAGATAGAAAACTCAAGTTCTAT  483
             |||||||||||||||||||||||||||||
Sbjct  1822  AATCTTGAGATAGAAAACTCAAGTTCTAT  1850


> AT5G37125.1 | Symbols:  | transposable element gene | chr5:14678341-14680737 
REVERSE LENGTH=2397
Length=2397

 Score = 62.1 bits (33),  Expect = 5e-09
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand=Plus/Plus

Query  21  ATGTCGTTAGTCCTTCACGACCCTGATCTTGTTGGTAATCGTC  63
           ||||| |||||||||||||||||||||||||||||| || |||
Sbjct  1   ATGTCATTAGTCCTTCACGACCCTGATCTTGTTGGTGAT-GTC  42



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5