BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949296

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22740.2 | Symbols: SUVH6 | SU(VAR)3-9 homolog 6 | chr2:9662...   176    1e-43


> AT2G22740.2 | Symbols: SUVH6 | SU(VAR)3-9 homolog 6 | chr2:9662638-9666981 
REVERSE LENGTH=2588
Length=2588

 Score =  176 bits (95),  Expect = 1e-43
 Identities = 150/174 (86%), Gaps = 13/174 (7%)
 Strand=Plus/Plus

Query  43   ATACAGAGACATCAAAGATTAAGTCGT-TGAGCAATGGAGAGGTTTTAGTGGAAAAACGA  101
            |||| |||| ||||||| ||||||| |  ||||||||| || |     ||||| ||||||
Sbjct  160  ATACGGAGATATCAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGA  212

Query  102  GGAGTGTCAGTTTTGGAGAATGGTGGTGTTTGCAAGCTTGATTGTATGACGACGGGGCTT  161
            |||||||||||||||||||||||||||||||||||||||||| | |||| |  ||| |||
Sbjct  213  GGAGTGTCAGTTTTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGA-GT-GGG-CTT  269

Query  162  AAGTTTAAGCGCCGGAAGGTTTTTGCTGTGAAGGA-TTTCCCACCGGGTTGTGG  214
            ||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct  270  AAGTTTAAGCGTCGGAAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG  322



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5