BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949298
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin... 1380 0.0
> AT5G48690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation
elongation factor EF1B, N-terminal,
eukaryote (InterPro:IPR015940), PUB domain (InterPro:IPR018997),
PUG domain (InterPro:IPR006567), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: ubiquitin-associated
(UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1);
Has 7001 Blast hits to 5165 proteins in 492 species:
Archae - 9; Bacteria - 505; Metazoa - 2653; Fungi - 905;
Plants - 287; Viruses - 19; Other Eukaryotes - 2623 (source:
NCBI BLink). | chr5:19747026-19749061 REVERSE LENGTH=1309
Length=1309
Score = 1380 bits (747), Expect = 0.0
Identities = 935/1024 (91%), Gaps = 20/1024 (2%)
Strand=Plus/Plus
Query 1 TCTCTGAGATTTTTT-GAAATATGGCAGAAGAAACCGAAAATGCTGCAATTGAGGTTAAT 59
||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 73 TCTCTGAGATTTTTTAGAAATATGTCAGACGGAACCGAAAATGCTGCAATTGAGGTTAAT 132
Query 60 CGA-GGATTGCTTAAGGAGCTTGAAGATATGGGATTCTCGATGGCTCGAGCTTCATGGGC 118
| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 133 C-ATGGATTGCTTAAGGAGCTTGAAGATATGGGATTCTCTATGGCTCGAGCAGCATGGGC 191
Query 119 TTTGCATCACTCTGGTAACTCTAGCCTTGAAGCAGCTGTGAATTGGATCATAGATCATGA 178
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 192 TCTGCATCACTCTGGTAACTCAAGCCTTGAAGCAGCTGTGAATTGGATCATAGATCATGA 251
Query 179 GAACGATTCGCAGTTTGAAAAAATGCCTTTGGTGGAATTTAACATTGAGATTGAGTCTCC 238
|||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 252 GAACGAATCGCAGTTTGAGAATATGCCTTTGGTGGAGTTTAACATTGAGATTGAGTCTCC 311
Query 239 AAATCCATCTCATGATACTGCAGAAAATGCTCAGGCAAGAGCAAAGGAACTAAT-GGAAC 297
|||||||||| ||||||||||||||| | |||| ||||||||||| ||||| || |||||
Sbjct 312 AAATCCATCTGATGATACTGCAGAAACTTCTCATGCAAGAGCAAAAGAACT-ATCGGAAC 370
Query 298 AAGCTCGTAAACTaagagaagaagaagaaactaaaggtgaaagagaaagagaaaaggaaa 357
||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 371 AAGCTCGTAAACTAAGAGAAGAACAAGAAACTAAACGCGAAAGAGAAAGAGAAAAGGAAA 430
Query 358 ggatacgagcagggaaagagaTGATGGAGACAAAGCGAATTGCGGAAGAAAACGAAAGAA 417
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 431 GGATACGAGCAGGGAAAGAGCTGATGGAAACAAAGCGAATTGCGGAAGAAAACGAAAGAA 490
Query 418 AACGGAACATAGCTTTGCGGAAAGCTGAGAAAGATGAGGAGAAAAAAGCAAGAGAGAAAA 477
||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 491 AACGGAACATAGCTTTGAGGAAGGCTGAGAAAGATGAGGAGAAAAAGGCAAGAGAGAAAA 550
Query 478 TTATGCTGAAAGTTAATGCAGACAAGTTGGAGAGAAAGCGGAGGCGCGGTTTGCCAACCG 537
|||||||||||||||||||||||||| |||||||||| ||||||| ||| || |||||||
Sbjct 551 TTATGCTGAAAGTTAATGCAGACAAGCTGGAGAGAAAACGGAGGCTCGGATTACCAACCG 610
Query 538 AA---GAATCTGCTTCGACATCAATTCAAGTTTCTTTACTTGACTCTAAGAGGAA-AGTA 593
|| ||||| ||||||||||||| || |||||| ||||||| ||||||| || |||
Sbjct 611 AAACAGAATCCGCTTCGACATCAAATCCAGTTTCGCCACTTGACCCTAAGAG-AATAGTG 669
Query 594 ATGTCGTCGTCACGCCCT-GCCTCGAAAGCAGAGGAGATGAGAGAATGCTTAAGGTCATT 652
||||||||| || || | | ||||||||||||||||||||||||||| |||||||||||
Sbjct 670 ATGTCGTCGCCAAGCG-TAGTCTCGAAAGCAGAGGAGATGAGAGAATGTTTAAGGTCATT 728
Query 653 GAGACGAAACCACAAAGATGAAGATCCAAGAATCACGAGGACGGCATTTGAAACGCTTCT 712
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 729 AAGACGAAACCACAAAGATGAAGATCCAAGAATCACGAGGAGGGTATTTGAAACGCTTCT 788
Query 713 GACAATTGTGAGGAACGTTGCAAAGAAGCCAGACGAAGAAAGATACAGAAGAATCCGTCT 772
|||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 789 GACAATTGTGAGGAACGTAGCGAAGAAGCCAGACGAAGAAAGATACAGGAGAATCCGTCT 848
Query 773 CAAGAACCGCTTGTTCCATGAGAGAGTTGGAAGATACAAAGAAGGTATTGAGTTCATGGA 832
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 849 CAAGAACCGCTTGTTCCATGAGAGAGTTGGAAGATATAAAGAAGGTATTGAGTTCATGGA 908
Query 833 ACTCTGTGGATTCAAGACAGAG--GAAGGATCTGAGTTCTTGTCTCTATCTTATCACGA- 889
|| ||||||||||| | |||| ||||||||||||||||| |||||||| | | ||
Sbjct 909 GCTTTGTGGATTCAA-A-AGAGTTGAAGGATCTGAGTTCTTATCTCTATCGAAACGTGAC 966
Query 890 TGCAGACATCAACCGGCTTCGAGACGCTGCGTTTCAGTTGAACTCTGCGATTACCAATCC 949
| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 967 T-CAGACATCAACCGGCTTCGAGACGCTGCGTTTCTGTTGAACTCTGCGAGTGCCAATCC 1025
Query 950 CTTCTTTGGTCTTCTTTCCACGAAAGCTGAAGAAGACTGTGAAAAATAATCTTTCTCTTT 1009
||||||||||||||| |||||| |||||||| | ||| ||||| || || ||||| |||
Sbjct 1026 CTTCTTTGGTCTTCTATCCACGGAAGCTGAA-A-GACCGTGAACAACAAACTTTCGCTTC 1083
Query 1010 CTGA 1013
||||
Sbjct 1084 CTGA 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5