BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949324
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48800.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2987 0.0
> AT5G48800.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:19786764-19789129 FORWARD LENGTH=2088
Length=2088
Score = 2987 bits (1617), Expect = 0.0
Identities = 1800/1889 (95%), Gaps = 9/1889 (0%)
Strand=Plus/Plus
Query 1 TCTTGAACATAATTCTATTTCATGGAAAAGCATCATCATCAGCATCTTTTGTTACAGCAT 60
|||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 97 TCTTGAACATAATTCTGCTTCATGGACAAGCATCATCATCAACATCTTTTATTACAGCAT 156
Query 61 CATCAACATCTCCACCATCACCAGAAGCTCTCTCTTGCCAAATCTTCTAGACAAAGCTGT 120
||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 157 CATCAACATCTTCACCATCATCAGAAGCTCTCTCTTGCCAAATCATCCAGACAAAGCTGT 216
Query 121 AGTGAATGGATCTTTCGAGACGTTCCAAGTGATATAACCATAGAAGTTAATGGAGGAAAC 180
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 217 AGTGAATGGATCTTTCGAGATGTTCCAAGTGATATAACCATAGAAGTAAACGGTGGAAAC 276
Query 181 TTTGCTCTGCATAAGTTCCCTTTAGTCTCTAGAAGTGGAAGAATCCGAAGAATAGTTGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTTGCTCTGCATAAGTTCCCTTTAGTCTCTAGAAGTGGAAGAATCCGAAGAATAGTTGCA 336
Query 241 GAACATAGAGATTCAGATATCTCTAAAGTGGAGCTTCTTAATCTTCCAGGAGGAGCAGAA 300
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 337 GAACATAGAGATTCAGATATCTCCAAAGTGGAGCTTCTTAATCTCCCAGGAGGAGCAGAG 396
Query 301 ACATTTGAATTAGCAGCCAAATTCTGCTATGGGATTAACTTCGAGATCACTTCTGCGAAC 360
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 397 ACATTCGAACTAGCAGCAAAATTCTGCTATGGGATTAACTTCGAGATCACTTCTTCGAAC 456
Query 361 GTTGCACAGCTCTTTTGCGTCTCTGATTACCTCGAGATGACGGAAGAGTATTCCAAAGAT 420
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 457 GTTGCACAGCTCTTTTGTGTCTCTGATTACCTCGAGATGACGGAAGAGTACTCCAAAGAT 516
Query 421 AACTTGGCTTCAAGAACAGAGGAGTATCTTGAGAGCATTGTGTGCAAGAATCTTGAGATG 480
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 517 AACTTGGCTTCAAGAACAGAGGAGTATCTTGAGAGCATCGTATGCAAGAATCTTGAGATG 576
Query 481 TGTGTTCAAGTCTTGAAACAATCCGAGAATCTTCTCCCTCTTGCAGATGAACTCAATATC 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 577 TGTGTTCAAGTCTTGAAACAATCCGAGATTCTTCTCCCTCTTGCAGATGAACTGAATATC 636
Query 541 ATAGGTAGATGTATCGATGCCATTGCCTCGAAGGCTTGCGCTGAACAGATTGCTTCGAGC 600
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 637 ATAGGTAGATGTATCGATGCCATTGCCTCGAAGGCTTGCGCTGAGCAGATCGCTTCAAGC 696
Query 601 TTCTC-ACGGTTAGAGTATAGTAGCTCAGGGAGGCTTCATATGAGCAGGCAAGTGAAGAA 659
|| || | |||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 697 TTTTCGA-GGTTGGAGTATAGTAGCTCAGGGAGGCTTCATATGAGCAGACAAGTGAA-AA 754
Query 660 -CAGTGGTGATGGAGGAGATTGGTGGATCGAAGATCTTTCGGTTCTTAGGATTGATTTGT 718
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 755 GCAGTGGTGATGGAGGAGATTGGTGGATCGAAGATCTTTCGGTTCTGAGGATTGATTTGT 814
Query 719 ATCAGAGAGTTATGAATGCAATGAAGTGTCGTGGTGTGCGTCCAGAGAGTATAGGAGCTT 778
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 815 ATCAGAGAGTTATGAATGCAATGAAGTGTCGTGGTGTACGTCCAGAAAGTATAGGAGCTT 874
Query 779 CTTTGGTTAGTTACGCCGAGAGAGAGCTGACAAAGAGATCTGAACATGAACAAACCATTG 838
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 875 CTTTGGTTAGTTACGCTGAGAGAGAGCTAACAAAGAGATCTGAACATGAACAAACCATTG 934
Query 839 TTGAGACAATTGTTACGCTTTTACCTGTCGAAAACCTCGTGGTTCCGATCAGTTTCCTCT 898
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 935 TTGAGACAATTGTTACGCTTTTGCCAGTCGAAAACCTCGTGGTTCCGATCAGTTTCCTAT 994
Query 899 TTGGGTTACTGAGAAGAGCAGTGATTCTTGATACTTCAGTTTCCTGCAGGCTTGATCTAG 958
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 995 TCGGGTTACTGAGAAGAGCAGTGATTCTTGATACTTCAGTTTCCTGCAGGCTTGATCTTG 1054
Query 959 AGAGAAGGATCGGTTCTCAGCTCGATATGGCGACTCTAGATGATCTCTTGATCCCGTCTT 1018
|||| ||| | |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1055 AGAGGAGGTTAGGTTCTCAGCTCGATATGGCGACTCTTGACGATCTCTTGATCCCGTCTT 1114
Query 1019 TTCGTCATGCAGGAGACACTTTGTTCGACATTGACACGGTTCATAGAATCTTGGTGAATT 1078
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1115 TTCGTCATGCAGGAGACACTTTGTTCGACATTGACACGGTTCACAGAATCTTAGTGAATT 1174
Query 1079 TCTCACAGCAAGGAGGAGATGACAGTGAGGATGAAGAGTCTGTGTTTGAATGCGATAGTC 1138
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1175 TCTCACAGCAAGGAGGAGATGATAGTGAGGATGAAGAGTCTGTGTTTGAATGCGATAGTC 1234
Query 1139 CACATTCGCCTTCACAAACTGCCATGTTTAAAGTTGCAAAGCTTGTAGACAGTTATCTTG 1198
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 CACATTCGCCTTCACAAACCGCCATGTTTAAAGTTGCAAAGCTTGTAGACAGTTATCTTG 1294
Query 1199 CTGAGATCGCTCCTGATGCTAACCTTGACCTTTCTAAGTTCTTGCTTATCGCAGAAGCCT 1258
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 CTGAGATAGCTCCCGATGCTAACCTTGACCTTTCTAAGTTCTTGCTTATCGCAGAAGCCT 1354
Query 1259 TACCGCCTCATGCTCGTACCCTTCACGATGGTTTATACCGTGCCACTGATCTCTACCTTA 1318
|||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 1355 TACCGCCTCATGCTCGCACCCTTCACGATGGTTTATACCGCGCCATTGATCTCTATCTTA 1414
Query 1319 AAGCACATCAAGGGTTATCAGATTCAGACAAGAAGAAGCTGTCAAAACTTATTGACTTCC 1378
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1415 AGGCACATCAAGGGTTATCAGATTCAGACAAGAAGAAACTATCAAAACTTATTGACTTCC 1474
Query 1379 AGAAACTCTCACAAGAAGCTGGAGCACACGCTGCCCAAAACGAGCGGCTTCCTCTACAAT 1438
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1475 AGAAACTCTCACAAGAAGCTGGAGCACACGCTGCACAAAACGAGCGGCTTCCTCTGCAAT 1534
Query 1439 CTATAGTTCAAGTTCTCTACTTTGAGCAACTGAAGCTTCGAAGCTCCTTGTGCTCTTCTT 1498
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1535 CCATAGTTCAAGTTCTCTACTTTGAGCAACTCAAGCTTCGAAGCTCCTTGTGCTCTTCTT 1594
Query 1499 ACTCGGACGAAGAGCCAAAGCCAAAGCAACAGCAACAACAGTCATGGAGAATCAATAGTG 1558
|||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 1595 ACTCAGACGAAGAGCCAAAGCCAAAGCAGCAACAACAGCAGTCATGGAGAATCAATAGCG 1654
Query 1559 GAGCTCTCAGCGCAGCAATGTCGCCCAAAGATAACTACGCATCTCTGAGGAGAGAAAACC 1618
|||||||||| ||| ||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 1655 GAGCTCTCAGTGCAACAATGTCCCCCAAAGACAACTATGCGTCTCTGAGGAGAGAAAACC 1714
Query 1619 GGGAACTGAAGCTCGAGTTAGCTAGGTTGAGAATGAGACTCAACGACCTAGAGAAAGAAC 1678
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 GAGAACTGAAGCTCGAGTTAGCTAGGTTGAGAATGAGACTCAACGACCTAGAGAAAGAAC 1774
Query 1679 ATATCTGTATGAAGAGAGATATGCAGAGGTCTCATTCGCGCAAATTCATGAGCAGTTTCT 1738
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 ATATATGTATGAAGAGAGATATGCAGAGGTCTCATTCGCGCAAATTCATGAGCAGTTTCT 1834
Query 1739 CAAAGAAAATGGGGAAGCTTAGCTTCTTTGGGCATAGCTCTTCAAGAGGATCAAGCTCTC 1798
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 CAAAGAAAATGGGGAAACTTAGCTTCTTTGGGCATAGCTCTTCAAGAGGATCAAGCTCTC 1894
Query 1799 CGTCAAAGCAGTCTTTCAGAACAGATTCAAAGGT---GATGGAGAGAACTTGCGCAAGCA 1855
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1895 CATCAAAGCAGTCTTTCAGAACAGATTCAAAGGTACTGATGGAGAGAACTTGCGCAAGCA 1954
Query 1856 CAGATTAGCTCAG-GTTATATCATTCTCT 1883
||||||||||||| ||| ||||||| |||
Sbjct 1955 CAGATTAGCTCAGTGTT-TATCATTTTCT 1982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93222412065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5