BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949330

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein f...   442    9e-124


> AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein 
family protein | chr5:19813346-19814554 FORWARD LENGTH=520
Length=520

 Score =  442 bits (239),  Expect = 9e-124
 Identities = 279/299 (93%), Gaps = 0/299 (0%)
 Strand=Plus/Plus

Query  2    TTCACTTACCTCACTCTTCTTCGTCATGGCGAACAATCCTTCGCAGCTTCTTCCATCAGA  61
            ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  37   TTCACTTGCCTCACTGTTCTTCGTCATGGCGAACAATCCTTCACAGCTTCTTCCTTCAGA  96

Query  62   GCTAATCGATAGGTGCATAGGATCGAAGATATGGGTGATTATGAAAGGAGATAAGGAGCT  121
            ||||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct  97   GCTAATCGATAGGTGTATAGGGTCTAAGATTTGGGTGATAATGAAAGGAGATAAGGAGCT  156

Query  122  TGTTGGTATTCTTAAAGGCTTCGATGTTTATGTTAACATGGTTCTTGAAGATGTCACCGA  181
             ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  157  CGTTGGTATTCTCAAAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTCACCGA  216

Query  182  ATATGAGATTACAGCAGAAGGAAGACGGGTTACAAAGCTTGATCAAATTCTGCTCAATGG  241
            |||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct  217  ATATGAGATTACGGCAGAAGGAAGACGGGTCACAAAGCTTGATCAGATTCTACTCAATGG  276

Query  242  CAACAACATCGCCATTCTCGTGCCAGGTGGGTCTCCCGAAGATGCAGAATGAGGTTTGC  300
            |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct  277  CAACAACATCGCCATTCTGGTGCCAGGTGGGTCTCCCGAAGATGGAGAATGAGATTTGC  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14527379461


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5