BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949333
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48890.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 765 0.0
> AT5G48890.1 | Symbols: | C2H2-like zinc finger protein | chr5:19820353-19820874
FORWARD LENGTH=522
Length=522
Score = 765 bits (414), Expect = 0.0
Identities = 488/524 (93%), Gaps = 4/524 (1%)
Strand=Plus/Plus
Query 26 ATGGAAGATCATTACCATCAAGTAGAAGTGGAGGAAGAAGAAGAGATCAAGCCATCCAAA 85
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1 ATGGAAGATCATTACCATCAAGTAGAAGTGGAGGGAGAAGAAGAGATCAAGCCAAGCAAA 60
Query 86 GAAGCCAACAAGACAGACGAAGACACATCATCATCAAGAATATTCCCCTGCCTCTTTTGT 145
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 61 GAAGCCAACAAGACAGACGAAAACACATCATCATTAAGAATATTCCCCTGCCTCTTTTGT 120
Query 146 TCTAGAAAGTTCCATAGCTCCCAAGCCCTAGGAGGCCACCAAAACGCCCACAAGAAGGAG 205
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCTAGAAAGTTCCATAGCTCCCAAGCCCTAGGAGGCCACCAGAACGCCCACAAGAAGGAG 180
Query 206 AGAACCGCTGCTAGAAGAGCGAAAAGGGCTTACGATTTCATCAACAGCAATGACTTGCTT 265
||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||| |||
Sbjct 181 CGAACCGCTGCTAGAAGAGCCAAAAGGGCTTATGATTTTGTCAACAACAATGACTTCCTT 240
Query 266 CACACGTTACCTGTTTTCTTATCCTCTCCTTCTCGACGCCACTTGACCATCTTAGGCTAC 325
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 241 CACACGTTACCTGTTTTCTTATCCTCTCCCTCTCAACATCACTTGACCATCTTAGGCTAC 300
Query 326 CCTGCTTCTGCCTCTGTTGCCTGCTTTCC-AGCGGTTCATACTGACCATCCGATCTTCAG 384
|||||||||||||| |||||||| ||||| | |||||||| | ||||||||||| ||||
Sbjct 301 CCTGCTTCTGCCTCCGTTGCCTGTTTTCCGA-CGGTTCATCCCGACCATCCGATTTTCAA 359
Query 385 ATCCAGTGGTTCTCATGTCGTGTTGGCCACATCCCACCAAGGTAGAGAGTGCAAAGGAGG 444
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 ATCCAGTGGTTCTCATGTCGTGTTGGCTACATCCCACCAAGGTAGAGATTGCAAAGGAGG 419
Query 445 GTATT-TTGGTCAACAACATGTTGACATTTTGGATCATCACTATAATGTGGTGAATAGTG 503
||| | ||| |||||||| ||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 420 GTACTGTTG-TCAACAACGTGTAGACATTTTGGATCATCATTATAACGTGGTCAATAGTG 478
Query 504 ACAAGGGTAAAGATCAGTGTCTTGATCTCTCCCTCCATTTGTGA 547
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 ACAAGGGTAAAGATCAGTGTCTTGATCTCTCCCTACATTTGTGA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5