BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949339

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22043829-22051...   150    7e-36


> AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22043829-22051086 
FORWARD LENGTH=4199
Length=4199

 Score =  150 bits (81),  Expect = 7e-36
 Identities = 96/103 (93%), Gaps = 2/103 (2%)
 Strand=Plus/Plus

Query  202   TGCATACGAGAACTACAGAAAATCAGGAAGATACTTTGATATAGTGTACCATGAGAATGC  261
             |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct  3314  TGCATACGAGAACTACAGAAAACCAGGAAGATTCTTTGATATAGTGTACCATGAGAATGC  3373

Query  262   TCGATCCCTTCCCCATTATCAGAACATATACCAG-ATTGAATA  303
             |||| |||||| |||| |||||||||||||| || ||||||||
Sbjct  3374  TCGAGCCCTTCTCCATGATCAGAACATATAC-AGGATTGAATA  3415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15130592449


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5